Gene detail

Detail information of GWHGAAZE006625

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002509468.1	0	kinase, putative [Ricinus communis]
Swissprot	tr\|Q9S9U1\|LRK71_ARATH	0	L-type lectin-domain containing receptor kinase VII.1 (Precursor)
trEMBL	tr\|B9RBD4\|B9RBD4_RICCO	0	Kinase, putative {ECO:0000313\|EMBL:EEF50855.1}
TAIR10	AT4G04960.1	5E-136	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28884143	28885492	+
GWHAAZE00000002	mRNA	28884143	28885492	+
GWHAAZE00000002	exon	28884143	28884314	+
GWHAAZE00000002	exon	28884345	28885492	+
GWHAAZE00000002	CDS	28884143	28884314	+
GWHAAZE00000002	CDS	28884345	28885492	+

Transcript Sequence
>GWHTAAZE006633 ATGTATGTTGGGTTCACTGCTTCAACTGGGGCTTTGATTGAAAGTCACAAGATTTTGGGTTGGAGTTTTAGTAATTCGAATTTTTCGCTAAGTGAAGCGTTGATTACAAGTGGGTTGCCATCGTTTGAGCTTCCGAAGACTCCGGTTTACAAAACGAAATCATTTCTCGCGGTTTCTTGTTCTGTGTTTGCTATTTTCTTGATTAAGAGGAAGAGAAGGAGAGCGAAGGAGAGGGCGGAAATGGAAGAGTGGGAATTGGAGTATTGGCCACATAGAATTACTTATCAAGAAATTGATTCGGCAACAAAGGGGTTTTCTGAGAAAAATGTGATTGGAATTGGAGGGAATGGTAAGGTTTATAAAGGGGTACTAGGAGGGGCAGAGATTGCGGTGAAGCGCATTTCTCATGATAACAATGAAGGAGTGAGGGAATTCTTAGCCGAAGTTTCAAGTCTTGGAAGGCTAAAGCATAGGAATTTAGTGGGCTTGAGAGGTTGGTGTAAGAAAGAGAAGGGTAGCTTGATTTTGGTGTATGATTATATGGAAAATGGGAGTTTGGACAAATGGGTGTTTGATTGTGATGAGACCAAGATGTTGAGTTGTGAAGACAGAATTAGGGTTTTGAAAGATGTGGCTTGTGGGGTTTTGTATTTGCATGAAGGTTGGGAGTCTAAAGTCCTTCACAGGGACATTAAGGCTAGCAATGTGTTACTTGATAAAGATTTCAATGGAAGGTTAGGTGATTTTGGGCTAGCCCGGATGCACGGGCACGGTCAAGTGGCTACCACGACTCGGGTGGTTGGGACCGTGGGGTACTTGGCACCTGAGGTGATTAGGACTGGTCGAGCCTCGACACAAACTGATGTTTTTGGTTTCGGGGTCTTGATTTTAGAGGTGATGTGTGGGAAAAGACCAATAGAGGAAGGGAAGTCACCTTTGGTAGAATGGGCTTGGGAACTATTGGGGAAGGGCGAATTAGTAAGTGCTCTTGATGTGCGGTTAAGGGCTAAAGGTGGGTTTGATGAAGAGGAAGTTGAAAGGGTGCTTCATTTAGGGTTGTTATGTGTGTATCCAGATGCACGCGCTAGGCCTACAATGAGGCAAGTTGTGAAAGTATTAGAAGGGAAGAGCGAGGTTGATGAATCCGAAGAAGGAGAAGATATGGATATTTACTTACTGGAGAAGATGAAATCTAAGGACATGTGGTCTAATTACTCTCAAAGTTTGAGTTCTGGGTCACACCCTACATTTGAAGATATTAAGAATGGAGTTTCTTCTACAATGTCAATGTCTTGGTCTGATATTGTGATAGGGAGGTGA

Network for GWHGAAZE006625

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	106	370	1.10E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0016020	cellular_component	membrane
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.617
	SRR3591706	second leaf	0.472
	SRR3591707	mature leaf	0.919
	SRR3591708	Shoot apex	4.894
	SRR3591709	Stem	4.807
	SRR3591710	White floral bud	2.453
	SRR3591711	White flower	4.673
	SRR3591712	Green floral bud	1.506
	SRR3591713	Yellow flower	5.858
SRP173429	SRR8316895	Juvenile bud stage	3.298
	SRR8316896	Juvenile bud stage	2.889
	SRR8316897	Juvenile bud stage	1.946
	SRR8316894	Third green stage	1.204
	SRR8316900	Third green stage	1.615
	SRR8316901	Third green stage	2.092
	SRR8316898	Complete white stage	0.769
	SRR8316899	Complete white stage	2.038
	SRR8316903	Complete white stage	2.543
	SRR8316902	Silver flowering stage	2.456
	SRR8316904	Silver flowering stage	4.257
	SRR8316905	Silver flowering stage	1.875
	SRR8316906	Gold flowering stage	7.806
	SRR8316907	Gold flowering stage	5.405
	SRR8316908	Gold flowering stage	10.320
SRP132670	SRR6706286	Control	1.987
	SRR6706287	Light intensity 50%	2.013
	SRR6706288	Light intensity 20%	1.853
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.939
	CNS0095593	Slightly white alabastrum(diploid) 2	4.443
	CNS0095594	Slightly white alabastrum(diploid) 3	4.078
	CNS0095595	Whole white alabastrum(diploid) 2	3.726
	CNS0095596	Whole white alabastrum(diploid) 3	0.886
	CNS0095597	Whole white alabastrum(diploid) 4	2.682
	CNS0095598	Silvery flower (diploied) 1	7.829
	CNS0095599	Silvery flower (diploied) 2	5.231
	CNS0095600	Silvery flower (diploied) 3	5.972
	CNS0095601	Golden flower (diploid) 1	9.446
	CNS0095602	Golden flower (diploid) 2	7.752
	CNS0095603	Golden flower (diploid) 3	7.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.118
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.903
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.935
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.235
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.113
	CNS0095610	Silvery flower (tetraploid) 1	5.136
	CNS0095611	Silvery flower (tetraploid) 2	2.640
	CNS0095612	Silvery flower (tetraploid) 3	5.461
	CNS0095613	Golden flower (tetraploid) 1	5.048
	CNS0095614	Golden flower (tetraploid) 2	8.922
	CNS0095615	Golden flower (tetraploid) 3	6.183
CRA001975	CRR073297	Stem 1	5.087
	CRR073298	Stem 2	5.972
	CRR073299	Stem 3	4.348
	CRR073300	Leaf 1	2.720
	CRR073301	Leaf 2	2.888
	CRR073302	Leaf 3	1.095
	CRR073303	Juvenile bud 1	0.926
	CRR073304	Juvenile bud 2	1.243
	CRR073305	Juvenile bud 3	1.409
	CRR073306	Third green 1	3.392
	CRR073307	Third green 2	2.647
	CRR073308	Third green 3	3.468
	CRR073309	Second white 1	3.851
	CRR073310	Second white 2	3.071
	CRR073311	Second white 3	2.648
	CRR073312	Silver flowering 1	4.845
	CRR073313	Silver flowering 2	2.941
	CRR073314	Silver flowering 3	3.499
	CRR073315	Gold flowering 1	2.993
	CRR073316	Gold flowering 2	3.930
	CRR073317	Gold flowering 3	3.110
	CRR073318	Tawny withering 1	6.410
	CRR073319	Tawny withering 2	4.979
	CRR073320	Tawny withering 3	5.327