Detail information of GWHGAAZE006623


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009352917.12.24653E-94PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Pyrus x bretschneideri]
Swissprottr|Q8L9A0|RM21_ARATH5E-7150S ribosomal protein L21, mitochondrial (Precursor)
trEMBLtr|M1CWR8|M1CWR8_SOLTU2E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076437}
TAIR10AT4G30930.12E-47Ribosomal protein L21

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2882739328831208-
GWHAAZE00000002mRNA2882739328831208-
GWHAAZE00000002exon2882739328827515-
GWHAAZE00000002exon2882769928827773-
GWHAAZE00000002exon2882868028828781-
GWHAAZE00000002exon2883056128830641-
GWHAAZE00000002exon2883075928831208-
GWHAAZE00000002CDS2883075928831208-
GWHAAZE00000002CDS2883056128830641-
GWHAAZE00000002CDS2882868028828781-
GWHAAZE00000002CDS2882769928827773-
GWHAAZE00000002CDS2882739328827515-
Transcript Sequence

Network for GWHGAAZE006623

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00829.22Ribosomal_L21p1462455.20E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02888RP-L21, MRPL21, rplU Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.269
SRR3591706second leaf11.437
SRR3591707mature leaf7.367
SRR3591708Shoot apex31.912
SRR3591709Stem12.492
SRR3591710White floral bud11.697
SRR3591711White flower19.981
SRR3591712Green floral bud29.448
SRR3591713Yellow flower14.910
SRP173429 SRR8316895Juvenile bud stage 28.542
SRR8316896Juvenile bud stage 38.088
SRR8316897Juvenile bud stage 15.303
SRR8316894Third green stage 13.907
SRR8316900Third green stage 35.983
SRR8316901Third green stage 30.179
SRR8316898Complete white stage 3.748
SRR8316899Complete white stage 30.924
SRR8316903Complete white stage 6.889
SRR8316902Silver flowering stage4.607
SRR8316904Silver flowering stage8.448
SRR8316905Silver flowering stage2.387
SRR8316906Gold flowering stage 10.910
SRR8316907Gold flowering stage 9.855
SRR8316908Gold flowering stage 12.268
SRP132670SRR6706286Control34.979
SRR6706287Light intensity 50%37.522
SRR6706288Light intensity 20%40.452
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.960
CNS0095593Slightly white alabastrum(diploid) 225.979
CNS0095594Slightly white alabastrum(diploid) 330.702
CNS0095595Whole white alabastrum(diploid) 222.788
CNS0095596Whole white alabastrum(diploid) 324.824
CNS0095597Whole white alabastrum(diploid) 418.813
CNS0095598Silvery flower (diploied) 122.012
CNS0095599Silvery flower (diploied) 215.290
CNS0095600Silvery flower (diploied) 312.043
CNS0095601Golden flower (diploid) 18.535
CNS0095602Golden flower (diploid) 212.010
CNS0095603Golden flower (diploid) 312.011
CNS0095604Slightly white alabastrum(tetraploid) 126.270
CNS0095605Slightly white alabastrum(tetraploid) 222.542
CNS0095606Slightly white alabastrum(tetraploid) 330.381
CNS0095607Whole white alabastrum(tetraploid) 110.178
CNS0095608Whole white alabastrum(tetraploid) 210.186
CNS0095609Whole white alabastrum(tetraploid) 324.546
CNS0095610Silvery flower (tetraploid) 113.442
CNS0095611Silvery flower (tetraploid) 216.315
CNS0095612Silvery flower (tetraploid) 37.353
CNS0095613Golden flower (tetraploid) 18.072
CNS0095614Golden flower (tetraploid) 211.780
CNS0095615Golden flower (tetraploid) 35.140
CRA001975CRR073297Stem 138.035
CRR073298Stem 232.724
CRR073299Stem 335.023
CRR073300Leaf 124.466
CRR073301Leaf 226.403
CRR073302Leaf 329.133
CRR073303Juvenile bud 132.360
CRR073304Juvenile bud 218.458
CRR073305Juvenile bud 327.091
CRR073306Third green 11.468
CRR073307Third green 21.654
CRR073308Third green 33.283
CRR073309Second white 14.164
CRR073310Second white 27.641
CRR073311Second white 33.534
CRR073312Silver flowering 11.610
CRR073313Silver flowering 23.553
CRR073314Silver flowering 33.026
CRR073315Gold flowering 118.848
CRR073316Gold flowering 222.381
CRR073317Gold flowering 315.040
CRR073318Tawny withering 123.410
CRR073319Tawny withering 219.749
CRR073320Tawny withering 327.624