Gene detail

Detail information of GWHGAAZE006616

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009618816.1	0	PREDICTED: sphingolipid delta(4)-desaturase DES1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9ZPH4\|DES1L_ARATH	0	Sphingolipid delta(4)-desaturase DES1-like
trEMBL	tr\|A0A097BTZ3\|A0A097BTZ3_TOBAC	0	Uncharacterized protein {ECO:0000313\|EMBL:AIS71916.1}
TAIR10	AT4G04930.1	1E-161	fatty acid desaturase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28710104	28712089	+
GWHAAZE00000002	mRNA	28710104	28712089	+
GWHAAZE00000002	exon	28710104	28710235	+
GWHAAZE00000002	exon	28711256	28712089	+
GWHAAZE00000002	CDS	28710104	28710235	+
GWHAAZE00000002	CDS	28711256	28712089	+

Transcript Sequence
>GWHTAAZE006624 ATGGGAGTAATGGCTACAGATTTCTTCTGGTCATACACAGATGAACCCCACGCTTCTCGTAGGAGACAGATCCTCTCTCAGTACCCTCAAATCAAAGAGCTTTTTGGCCCTGATCCCTGGGCTTTTCTTAAGATTACCATGGTCGTCTCACTTCAGCTATGGACCGCTACTTACCTTCACAATGCAAGTTGGCTGAAGATACTAATGGTGGCCTACTTTTTCGGCTCATTTCTCAACCACAATCTCTTCCTAGCCATTCATGAACTAAGTCACAATCTTGCCTTCTCTACTCCCGTCTACAACCGATGGCTTGGGATTTTCGCTAACCTTCCCATTGGTGTACCCATGTCCGTCACCTTCCAAAAGTACCACCTCGAGCACCACCGCTTCCAAGGAGTGGACGGTATTGATATGGACATACCCACTCTCACCGAAGCCCATCTTGTTAAAAATATAATCGCCAAATCCATATGGGTCATTTTACAACTCTTCTTTTACGCACTCCGCCCTCTATTTATCAAACCAAAACCACCTGGTATGTGGGAATTCATCAATTTTGTTGTCCAGATTGCCCTTGATACCGCAATTGTTTACTTTTGGGGCTGGAAATCTTTTGGGTATATGATTTTATCGACCTTTGTTGGGGGTGGGATGCACCCTATGGCGGGCCACTTTATCTCGGAGCATTATGTCTTCAACAAGGGCCAGGAAACGTATTCTTACTACGGTCCATTAAATTTGATGACATGGAGCGTAGGGTACCATAATGAGCATCATGATTTCCCTAGGATCGCGGGTAGGAAGCTTTACAAGGTGAAGGAGATTGCACCAGAATATTACGAGAATTTAGACGCATATAAATCATGGAGCCAGGTGATTTACATGTATATAATGGACAGGACAGTTGGGCCTTTCAGCAGGATGAAGAGAAAGTTGTCAACAAAGAACACTAACAAGAGTGAATAG

Network for GWHGAAZE006616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08557.11	Lipid_DES	6	40	2.40E-20
PF00487.25	FA_desaturase	63	282	9.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04712	DEGS	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071

Gene Ontology

GO term	Ontology	Name
GO:0030148	biological_process	sphingolipid biosynthetic process
GO:0006629	biological_process	lipid metabolic process
GO:0016021	cellular_component	integral component of membrane
GO:0042284	molecular_function	sphingolipid delta-4 desaturase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.339
	SRR3591706	second leaf	19.252
	SRR3591707	mature leaf	8.530
	SRR3591708	Shoot apex	19.123
	SRR3591709	Stem	8.812
	SRR3591710	White floral bud	403.216
	SRR3591711	White flower	19.544
	SRR3591712	Green floral bud	343.197
	SRR3591713	Yellow flower	13.317
SRP173429	SRR8316895	Juvenile bud stage	22.286
	SRR8316896	Juvenile bud stage	59.776
	SRR8316897	Juvenile bud stage	32.881
	SRR8316894	Third green stage	30.884
	SRR8316900	Third green stage	198.297
	SRR8316901	Third green stage	190.485
	SRR8316898	Complete white stage	2.319
	SRR8316899	Complete white stage	14.781
	SRR8316903	Complete white stage	3.327
	SRR8316902	Silver flowering stage	5.640
	SRR8316904	Silver flowering stage	9.755
	SRR8316905	Silver flowering stage	3.419
	SRR8316906	Gold flowering stage	1.901
	SRR8316907	Gold flowering stage	1.356
	SRR8316908	Gold flowering stage	1.461
SRP132670	SRR6706286	Control	92.396
	SRR6706287	Light intensity 50%	101.343
	SRR6706288	Light intensity 20%	89.041
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	170.488
	CNS0095593	Slightly white alabastrum(diploid) 2	147.596
	CNS0095594	Slightly white alabastrum(diploid) 3	187.099
	CNS0095595	Whole white alabastrum(diploid) 2	395.653
	CNS0095596	Whole white alabastrum(diploid) 3	446.138
	CNS0095597	Whole white alabastrum(diploid) 4	554.603
	CNS0095598	Silvery flower (diploied) 1	23.131
	CNS0095599	Silvery flower (diploied) 2	73.007
	CNS0095600	Silvery flower (diploied) 3	15.354
	CNS0095601	Golden flower (diploid) 1	28.441
	CNS0095602	Golden flower (diploid) 2	14.072
	CNS0095603	Golden flower (diploid) 3	14.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	263.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	319.952
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.423
	CNS0095607	Whole white alabastrum(tetraploid) 1	582.388
	CNS0095608	Whole white alabastrum(tetraploid) 2	701.370
	CNS0095609	Whole white alabastrum(tetraploid) 3	282.778
	CNS0095610	Silvery flower (tetraploid) 1	10.986
	CNS0095611	Silvery flower (tetraploid) 2	39.448
	CNS0095612	Silvery flower (tetraploid) 3	96.727
	CNS0095613	Golden flower (tetraploid) 1	18.524
	CNS0095614	Golden flower (tetraploid) 2	2.750
	CNS0095615	Golden flower (tetraploid) 3	47.164
CRA001975	CRR073297	Stem 1	40.279
	CRR073298	Stem 2	40.192
	CRR073299	Stem 3	27.268
	CRR073300	Leaf 1	157.095
	CRR073301	Leaf 2	107.631
	CRR073302	Leaf 3	66.645
	CRR073303	Juvenile bud 1	135.542
	CRR073304	Juvenile bud 2	102.547
	CRR073305	Juvenile bud 3	17.890
	CRR073306	Third green 1	62.974
	CRR073307	Third green 2	80.276
	CRR073308	Third green 3	63.672
	CRR073309	Second white 1	2.064
	CRR073310	Second white 2	11.951
	CRR073311	Second white 3	11.735
	CRR073312	Silver flowering 1	51.755
	CRR073313	Silver flowering 2	44.407
	CRR073314	Silver flowering 3	39.391
	CRR073315	Gold flowering 1	59.214
	CRR073316	Gold flowering 2	23.935
	CRR073317	Gold flowering 3	14.234
	CRR073318	Tawny withering 1	74.433
	CRR073319	Tawny withering 2	68.717
	CRR073320	Tawny withering 3	70.186