Gene detail

Detail information of GWHGAAZE006614

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647203.1	0	PREDICTED: splicing factor U2af large subunit B-like [Vitis vinifera]
Swissprot	tr\|Q9ZR39\|U2A2A_NICPL	3E-138	Splicing factor U2af large subunit A
trEMBL	tr\|B9H2X3\|B9H2X3_POPTR	1E-171	Uncharacterized protein {ECO:0000313\|EMBL:EEE85659.2}
TAIR10	AT1G60900.1	1E-106	U2 snRNP auxilliary factor, large subunit, splicing factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28686482	28703848	-
GWHAAZE00000002	mRNA	28686482	28703848	-
GWHAAZE00000002	exon	28703783	28703848	-
GWHAAZE00000002	exon	28701952	28702121	-
GWHAAZE00000002	exon	28701483	28701584	-
GWHAAZE00000002	exon	28697128	28697189	-
GWHAAZE00000002	exon	28696428	28696498	-
GWHAAZE00000002	exon	28696283	28696327	-
GWHAAZE00000002	exon	28696129	28696188	-
GWHAAZE00000002	exon	28691418	28691533	-
GWHAAZE00000002	exon	28690620	28690718	-
GWHAAZE00000002	exon	28690406	28690481	-
GWHAAZE00000002	exon	28690076	28690164	-
GWHAAZE00000002	exon	28687659	28687725	-
GWHAAZE00000002	exon	28687478	28687576	-
GWHAAZE00000002	exon	28687303	28687384	-
GWHAAZE00000002	exon	28686897	28686964	-
GWHAAZE00000002	exon	28686482	28686619	-
GWHAAZE00000002	CDS	28703783	28703848	-
GWHAAZE00000002	CDS	28701952	28702121	-
GWHAAZE00000002	CDS	28701483	28701584	-
GWHAAZE00000002	CDS	28697128	28697189	-
GWHAAZE00000002	CDS	28696428	28696498	-
GWHAAZE00000002	CDS	28696283	28696327	-
GWHAAZE00000002	CDS	28696129	28696188	-
GWHAAZE00000002	CDS	28691418	28691533	-
GWHAAZE00000002	CDS	28690620	28690718	-
GWHAAZE00000002	CDS	28690406	28690481	-
GWHAAZE00000002	CDS	28690076	28690164	-
GWHAAZE00000002	CDS	28687659	28687725	-
GWHAAZE00000002	CDS	28687478	28687576	-
GWHAAZE00000002	CDS	28687303	28687384	-
GWHAAZE00000002	CDS	28686897	28686964	-
GWHAAZE00000002	CDS	28686482	28686619	-

Transcript Sequence
>GWHTAAZE006622 ATGTCTCGTCACGATAGTAGACACAATGGCGATGGAAACGGAGACGGTGGATCTTCACCCTACGATCACAAATCCCGTGAATCTGATCATGACAGAGTGAGGAGCAGAGATCGGGATCGAGATAGAGAAAAAGATTTTGACCGCCGAAGAGACTACAAGGACAGAAGCAGTAGGGATAGCAGAGGAAGGGGCAGGGATGAAGATAGTGGGCGTTCTAGGAACCATGAATACGGCAGGGGGCATGATCACGATCGAGATAGAGAGAGGCATCATAGACGTAGATCACGTTCCCGATCAGCAGATAGATCTAGTGAGAAATCTAGATCTCGCTCGAAAAGCAAGCGGACAAGTGGTTTTGACATGGCACCTCCAGTTGCTGGCGGATTGCCTGGTGCAACAGGGCAACTGCCAGATGCTCCTCAAACAATGCCCGGGATGTTCCAAAATATGTTTCCTTTTGGGGCTGCACAGTTGGGAGCTTTGCCTATGATGCCAGCACAAGCCATGACTCAGCAGGCTACAAGGCATGCACGTCGAGTATATGTTGGCGGTCTTCCTCCGTTGGCAAATGAGCAGGGAGTTTCTGTGAGGGTTCGAAGGCCTACAGATTACAATCCTTCACTAGCTGCAGCACTTGGTCCTAGCCAACCAAATCCTCATCTTAACTTAGCTGCTGCTGGGCTTACACCAGGTGGGATTGGTGGAGCTGAAGGGCCAGACCGTATCTTCGTGGGCGGGTTGCCATACTACTTCACAGAAGTACAGATAAGAGAACTGCTAGAATCCTTTGGGCCATTACGTGGATTTGACCTTGTAAAGGATAGGGACACTGGAAACTCGAAGGGATATGGTTTCTGCGTTTATGAGGATCAAGCAGCCACTGATGTTGCATGTGCCGCCCTAAATGGCTTGAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCTACTATCAGCAGTGGGCAGGTGAAATCCGAGCAGGAAAATATACTAGCTCAGGCACAACAGCATATAGCTATACAGAAAATGGCTTTGCAAGTTGGTGGTGTGAATCTTCCTGGAGTAGGGATGGGTCCCATGGTTCCTGCTGAGACTCCAACTAAAGTTTTATGCTTAACTGAGGTGGTTAATGCTAGTGAACTGGTGGACGATGGGGAGTATGAAGAAATACTAGAGGACATGAGGGATGAAGGCGGCAAGTTTGGAGATTTGGTGAATGTTGTTATCCCCCGGCCAAGCCCAAATGGAGATCAGGTTCAAGGTCTTGGGAAGGTGTTTTTGGAGTATTCGGATACCAGCAGTTGTGCTAACGCGAGGGAAGCACTAAACGGTAGGAGATTCGGAGGCAATGTAGTGACTGCCGTCTATTATCCTGAAGACAAATACACCAGCAGAGAATATGGTGCTTAA

Network for GWHGAAZE006614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	242	311	1.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12837	U2AF2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006397	biological_process	mRNA processing
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.521
	SRR3591706	second leaf	38.864
	SRR3591707	mature leaf	40.102
	SRR3591708	Shoot apex	66.605
	SRR3591709	Stem	63.441
	SRR3591710	White floral bud	58.032
	SRR3591711	White flower	58.340
	SRR3591712	Green floral bud	49.898
	SRR3591713	Yellow flower	53.986
SRP173429	SRR8316895	Juvenile bud stage	33.389
	SRR8316896	Juvenile bud stage	53.780
	SRR8316897	Juvenile bud stage	23.110
	SRR8316894	Third green stage	21.028
	SRR8316900	Third green stage	51.727
	SRR8316901	Third green stage	58.844
	SRR8316898	Complete white stage	20.812
	SRR8316899	Complete white stage	62.547
	SRR8316903	Complete white stage	37.538
	SRR8316902	Silver flowering stage	22.645
	SRR8316904	Silver flowering stage	31.479
	SRR8316905	Silver flowering stage	15.551
	SRR8316906	Gold flowering stage	45.199
	SRR8316907	Gold flowering stage	48.958
	SRR8316908	Gold flowering stage	53.958
SRP132670	SRR6706286	Control	89.708
	SRR6706287	Light intensity 50%	85.186
	SRR6706288	Light intensity 20%	84.461
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.046
	CNS0095593	Slightly white alabastrum(diploid) 2	45.249
	CNS0095594	Slightly white alabastrum(diploid) 3	41.990
	CNS0095595	Whole white alabastrum(diploid) 2	34.258
	CNS0095596	Whole white alabastrum(diploid) 3	32.591
	CNS0095597	Whole white alabastrum(diploid) 4	30.796
	CNS0095598	Silvery flower (diploied) 1	59.590
	CNS0095599	Silvery flower (diploied) 2	51.744
	CNS0095600	Silvery flower (diploied) 3	36.574
	CNS0095601	Golden flower (diploid) 1	53.082
	CNS0095602	Golden flower (diploid) 2	34.882
	CNS0095603	Golden flower (diploid) 3	36.595
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.471
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.351
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.054
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.252
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.493
	CNS0095610	Silvery flower (tetraploid) 1	55.625
	CNS0095611	Silvery flower (tetraploid) 2	41.620
	CNS0095612	Silvery flower (tetraploid) 3	33.172
	CNS0095613	Golden flower (tetraploid) 1	47.506
	CNS0095614	Golden flower (tetraploid) 2	54.639
	CNS0095615	Golden flower (tetraploid) 3	45.496
CRA001975	CRR073297	Stem 1	53.283
	CRR073298	Stem 2	48.209
	CRR073299	Stem 3	39.611
	CRR073300	Leaf 1	55.262
	CRR073301	Leaf 2	59.555
	CRR073302	Leaf 3	35.975
	CRR073303	Juvenile bud 1	37.052
	CRR073304	Juvenile bud 2	27.072
	CRR073305	Juvenile bud 3	46.357
	CRR073306	Third green 1	11.212
	CRR073307	Third green 2	8.233
	CRR073308	Third green 3	10.039
	CRR073309	Second white 1	4.476
	CRR073310	Second white 2	5.025
	CRR073311	Second white 3	6.297
	CRR073312	Silver flowering 1	6.145
	CRR073313	Silver flowering 2	4.021
	CRR073314	Silver flowering 3	7.354
	CRR073315	Gold flowering 1	15.864
	CRR073316	Gold flowering 2	18.612
	CRR073317	Gold flowering 3	13.994
	CRR073318	Tawny withering 1	36.001
	CRR073319	Tawny withering 2	37.886
	CRR073320	Tawny withering 3	39.942