Detail information of GWHGAAZE006609


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004232837.10PREDICTED: splicing factor 3B subunit 2 [Solanum lycopersicum]
trEMBLtr|K4B985|K4B985_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g078610.2.1}
TAIR10AT4G21660.10proline-rich spliceosome-associated (PSP) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2858334628591774-
GWHAAZE00000002mRNA2858334628591774-
GWHAAZE00000002exon2858334628583417-
GWHAAZE00000002exon2858375228583821-
GWHAAZE00000002exon2858390728583998-
GWHAAZE00000002exon2858441728584465-
GWHAAZE00000002exon2858458728584645-
GWHAAZE00000002exon2858473228584813-
GWHAAZE00000002exon2858493828585074-
GWHAAZE00000002exon2858544828585507-
GWHAAZE00000002exon2858565228585771-
GWHAAZE00000002exon2858659628586697-
GWHAAZE00000002exon2858735828587444-
GWHAAZE00000002exon2858760028587692-
GWHAAZE00000002exon2858790928587986-
GWHAAZE00000002exon2858856228588669-
GWHAAZE00000002exon2858924728589309-
GWHAAZE00000002exon2858943828589563-
GWHAAZE00000002exon2858967428589793-
GWHAAZE00000002exon2859153828591774-
GWHAAZE00000002CDS2859153828591774-
GWHAAZE00000002CDS2858967428589793-
GWHAAZE00000002CDS2858943828589563-
GWHAAZE00000002CDS2858924728589309-
GWHAAZE00000002CDS2858856228588669-
GWHAAZE00000002CDS2858790928587986-
GWHAAZE00000002CDS2858760028587692-
GWHAAZE00000002CDS2858735828587444-
GWHAAZE00000002CDS2858659628586697-
GWHAAZE00000002CDS2858565228585771-
GWHAAZE00000002CDS2858544828585507-
GWHAAZE00000002CDS2858493828585074-
GWHAAZE00000002CDS2858473228584813-
GWHAAZE00000002CDS2858458728584645-
GWHAAZE00000002CDS2858441728584465-
GWHAAZE00000002CDS2858390728583998-
GWHAAZE00000002CDS2858375228583821-
GWHAAZE00000002CDS2858334628583417-
Transcript Sequence

Network for GWHGAAZE006609

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04037.14DUF3821773021.10E-58
PF04046.17PSP3113566.70E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12829SF3B2, SAP145, CUS1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf80.881
SRR3591706second leaf45.926
SRR3591707mature leaf48.579
SRR3591708Shoot apex87.046
SRR3591709Stem69.200
SRR3591710White floral bud74.484
SRR3591711White flower80.515
SRR3591712Green floral bud69.824
SRR3591713Yellow flower73.481
SRP173429 SRR8316895Juvenile bud stage 43.883
SRR8316896Juvenile bud stage 57.378
SRR8316897Juvenile bud stage 25.261
SRR8316894Third green stage 25.372
SRR8316900Third green stage 59.891
SRR8316901Third green stage 59.139
SRR8316898Complete white stage 27.930
SRR8316899Complete white stage 77.382
SRR8316903Complete white stage 49.789
SRR8316902Silver flowering stage28.354
SRR8316904Silver flowering stage36.376
SRR8316905Silver flowering stage19.132
SRR8316906Gold flowering stage 65.954
SRR8316907Gold flowering stage 66.237
SRR8316908Gold flowering stage 68.784
SRP132670SRR6706286Control76.321
SRR6706287Light intensity 50%74.109
SRR6706288Light intensity 20%77.045
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.215
CNS0095593Slightly white alabastrum(diploid) 237.175
CNS0095594Slightly white alabastrum(diploid) 335.840
CNS0095595Whole white alabastrum(diploid) 239.120
CNS0095596Whole white alabastrum(diploid) 334.213
CNS0095597Whole white alabastrum(diploid) 431.978
CNS0095598Silvery flower (diploied) 147.312
CNS0095599Silvery flower (diploied) 243.268
CNS0095600Silvery flower (diploied) 350.739
CNS0095601Golden flower (diploid) 144.590
CNS0095602Golden flower (diploid) 255.503
CNS0095603Golden flower (diploid) 354.099
CNS0095604Slightly white alabastrum(tetraploid) 154.656
CNS0095605Slightly white alabastrum(tetraploid) 246.451
CNS0095606Slightly white alabastrum(tetraploid) 378.332
CNS0095607Whole white alabastrum(tetraploid) 138.837
CNS0095608Whole white alabastrum(tetraploid) 233.294
CNS0095609Whole white alabastrum(tetraploid) 362.642
CNS0095610Silvery flower (tetraploid) 179.304
CNS0095611Silvery flower (tetraploid) 268.351
CNS0095612Silvery flower (tetraploid) 342.476
CNS0095613Golden flower (tetraploid) 142.947
CNS0095614Golden flower (tetraploid) 266.996
CNS0095615Golden flower (tetraploid) 356.389
CRA001975CRR073297Stem 183.244
CRR073298Stem 278.171
CRR073299Stem 363.539
CRR073300Leaf 179.430
CRR073301Leaf 269.459
CRR073302Leaf 355.881
CRR073303Juvenile bud 156.925
CRR073304Juvenile bud 254.637
CRR073305Juvenile bud 356.706
CRR073306Third green 125.942
CRR073307Third green 221.961
CRR073308Third green 328.545
CRR073309Second white 118.876
CRR073310Second white 229.301
CRR073311Second white 326.048
CRR073312Silver flowering 122.024
CRR073313Silver flowering 221.988
CRR073314Silver flowering 324.963
CRR073315Gold flowering 139.275
CRR073316Gold flowering 256.685
CRR073317Gold flowering 335.039
CRR073318Tawny withering 152.161
CRR073319Tawny withering 245.122
CRR073320Tawny withering 348.283