Detail information of GWHGAAZE006593


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006433387.10hypothetical protein CICLE_v10000178mg [Citrus clementina]
Swissprottr|Q9SSE9|JMJ25_ARATH3E-91Lysine-specific demethylase JMJ25
trEMBLtr|V4T0L1|V4T0L1_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR46627.1}
TAIR10AT1G09060.20Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2833031328337890-
GWHAAZE00000002mRNA2833031328337890-
GWHAAZE00000002exon2833031328330387-
GWHAAZE00000002exon2833063828330742-
GWHAAZE00000002exon2833085828330943-
GWHAAZE00000002exon2833119528331267-
GWHAAZE00000002exon2833164128332060-
GWHAAZE00000002exon2833291928333248-
GWHAAZE00000002exon2833393628334551-
GWHAAZE00000002exon2833499728335051-
GWHAAZE00000002exon2833514528335277-
GWHAAZE00000002exon2833570128335800-
GWHAAZE00000002exon2833587428336019-
GWHAAZE00000002exon2833647428336579-
GWHAAZE00000002exon2833674228336803-
GWHAAZE00000002exon2833736928337890-
GWHAAZE00000002CDS2833736928337890-
GWHAAZE00000002CDS2833674228336803-
GWHAAZE00000002CDS2833647428336579-
GWHAAZE00000002CDS2833587428336019-
GWHAAZE00000002CDS2833570128335800-
GWHAAZE00000002CDS2833514528335277-
GWHAAZE00000002CDS2833499728335051-
GWHAAZE00000002CDS2833393628334551-
GWHAAZE00000002CDS2833291928333248-
GWHAAZE00000002CDS2833164128332060-
GWHAAZE00000002CDS2833119528331267-
GWHAAZE00000002CDS2833085828330943-
GWHAAZE00000002CDS2833063828330742-
GWHAAZE00000002CDS2833031328330387-
Transcript Sequence

Network for GWHGAAZE006593

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08879.11WRC12524.40E-14
PF10497.10zf-4CXXC_R12423103.40E-07
PF02373.23JmjC7928886.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
K15601KDM3 Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.390
SRR3591706second leaf15.616
SRR3591707mature leaf13.695
SRR3591708Shoot apex18.816
SRR3591709Stem24.576
SRR3591710White floral bud13.534
SRR3591711White flower15.519
SRR3591712Green floral bud12.465
SRR3591713Yellow flower12.682
SRP173429 SRR8316895Juvenile bud stage 11.911
SRR8316896Juvenile bud stage 14.204
SRR8316897Juvenile bud stage 6.807
SRR8316894Third green stage 7.099
SRR8316900Third green stage 15.735
SRR8316901Third green stage 14.276
SRR8316898Complete white stage 3.930
SRR8316899Complete white stage 18.695
SRR8316903Complete white stage 8.225
SRR8316902Silver flowering stage3.991
SRR8316904Silver flowering stage6.372
SRR8316905Silver flowering stage3.157
SRR8316906Gold flowering stage 11.046
SRR8316907Gold flowering stage 10.789
SRR8316908Gold flowering stage 11.771
SRP132670SRR6706286Control8.591
SRR6706287Light intensity 50%8.801
SRR6706288Light intensity 20%8.811
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.351
CNS0095593Slightly white alabastrum(diploid) 29.542
CNS0095594Slightly white alabastrum(diploid) 38.387
CNS0095595Whole white alabastrum(diploid) 29.642
CNS0095596Whole white alabastrum(diploid) 36.968
CNS0095597Whole white alabastrum(diploid) 47.925
CNS0095598Silvery flower (diploied) 113.029
CNS0095599Silvery flower (diploied) 29.870
CNS0095600Silvery flower (diploied) 311.481
CNS0095601Golden flower (diploid) 112.505
CNS0095602Golden flower (diploid) 212.570
CNS0095603Golden flower (diploid) 312.366
CNS0095604Slightly white alabastrum(tetraploid) 113.337
CNS0095605Slightly white alabastrum(tetraploid) 29.718
CNS0095606Slightly white alabastrum(tetraploid) 323.221
CNS0095607Whole white alabastrum(tetraploid) 17.369
CNS0095608Whole white alabastrum(tetraploid) 25.616
CNS0095609Whole white alabastrum(tetraploid) 313.920
CNS0095610Silvery flower (tetraploid) 113.573
CNS0095611Silvery flower (tetraploid) 213.814
CNS0095612Silvery flower (tetraploid) 311.222
CNS0095613Golden flower (tetraploid) 18.339
CNS0095614Golden flower (tetraploid) 214.279
CNS0095615Golden flower (tetraploid) 310.471
CRA001975CRR073297Stem 112.852
CRR073298Stem 211.955
CRR073299Stem 39.339
CRR073300Leaf 111.211
CRR073301Leaf 28.917
CRR073302Leaf 38.179
CRR073303Juvenile bud 17.097
CRR073304Juvenile bud 24.368
CRR073305Juvenile bud 36.751
CRR073306Third green 11.913
CRR073307Third green 21.967
CRR073308Third green 32.689
CRR073309Second white 11.306
CRR073310Second white 22.853
CRR073311Second white 33.447
CRR073312Silver flowering 11.676
CRR073313Silver flowering 21.453
CRR073314Silver flowering 31.132
CRR073315Gold flowering 13.711
CRR073316Gold flowering 26.302
CRR073317Gold flowering 33.627
CRR073318Tawny withering 17.356
CRR073319Tawny withering 24.241
CRR073320Tawny withering 35.215