Gene detail

Detail information of GWHGAAZE006586

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG15362.1	0	U4/U6.U5 tri-snRNP-associated 2 [Gossypium arboreum]
Swissprot	tr\|O22207\|UBP5_ARATH	3E-11	Ubiquitin carboxyl-terminal hydrolase 5
trEMBL	tr\|A0A061GH26\|A0A061GH26_THECC	0	Ubiquitin C-terminal hydrolases superfamily protein {ECO:0000313\|EMBL:EOY28881.1}
TAIR10	AT4G22285.1	0	Ubiquitin C-terminal hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28220071	28223940	+
GWHAAZE00000002	mRNA	28220071	28223940	+
GWHAAZE00000002	exon	28220071	28220298	+
GWHAAZE00000002	exon	28220521	28220765	+
GWHAAZE00000002	exon	28220927	28221011	+
GWHAAZE00000002	exon	28221162	28221347	+
GWHAAZE00000002	exon	28221816	28221983	+
GWHAAZE00000002	exon	28222084	28222209	+
GWHAAZE00000002	exon	28222408	28222579	+
GWHAAZE00000002	exon	28223301	28223457	+
GWHAAZE00000002	exon	28223552	28223940	+
GWHAAZE00000002	CDS	28220071	28220298	+
GWHAAZE00000002	CDS	28220521	28220765	+
GWHAAZE00000002	CDS	28220927	28221011	+
GWHAAZE00000002	CDS	28221162	28221347	+
GWHAAZE00000002	CDS	28221816	28221983	+
GWHAAZE00000002	CDS	28222084	28222209	+
GWHAAZE00000002	CDS	28222408	28222579	+
GWHAAZE00000002	CDS	28223301	28223457	+
GWHAAZE00000002	CDS	28223552	28223645	+
GWHAAZE00000002	three_prime_UTR	28223646	28223940	+

Transcript Sequence
>GWHTAAZE006594 ATGGAAGTTCCTTCAAGTGTGGTCAAAGAGACGATGAAAAGAAAGGGAGAAGGGAAGACTGAGGGAGAGGAGGGCTGCCCTAAAAGGCAGAAGCTGGAGAGCAATGGCCATAACTATGATGAAGACAATGACAACGATGATGATAGGAAAGGACCTAGCCAAGGGAAACACAACCAGATAGTCGAGGGTCGGAGAGACTGCCCTTATCTCGACTCAGTTAATCGCAAGGTTTTGGATTTTGATTTTGAGAAGTTCTGTTCTGTCTCGCTTTCAAATTTCAATGTGTATGCCTGTTTGGTCTGTGGCAAGTATTACCAAGGAAGAAGGCAGAAATCTCATGCATACACGCATAGCCTTGAAGTAGGCCACCATGTTTACATCAGTCTTCAAACCGAAAAAGTTTACTGCCTTCCTGATGGATATGAAATTAACGACCCATCGTTAGATGATATTCGACTTGTTCTTAATCCAAGATTTAGTAGGAAGCAAGTTGAGCAACTTGATAAAAACAAGCAATGGTCTAGGGCACTTGACGGTTCTGATTATCTTCCTGGAATGGTCGGACTAAATAACATTAAAGATACGGATTTTGTGAATGTCACAATCCAGTCTCTAATGCGAGTTACTCCGTTGAGGGACTTTTTCCTTGTCCCTGAGAACTACAAGCACAGCAAATCTCTACTTGTTCATCGTTTTGGAGAGCTAACTCGAAGGATTTGGCATCCCCGCAACTTCAAGGGACAGGTGAGCCCGCATGAGTTTCTGCAGGCAGTTATGCAAGCTAGTGAAAAACGTTTTCAGATAGGCGTGCAGTCTGACCCTGTTAAGTTTATGTCATGGCTTCTTGATACACTACATAAAGATCTCAGGACTTCCAAGAGAAGTAGCAGCATTATCAATCAGTGTTTTCAGGGAGAATTGGAGGTTGTGGAAGAGATTCACGGTGGAGCAGAAGGGAATAATGTTGTCACAGAGACTAGCAGAATGCCATTTCTAATGCTTGGACTGGATTTGCCTCCGCCACCTCTCTTCAAAGATGTTCCACTTTTCAATTTACTGAAGAAGTTTGATGGCGAGTTTCTCACAGAAGTTGTGCGCCCTCGTATAGCAAGGATGAGATACTGTGTTACAAGACTGCCACAGTATCTCATCCTCCACATGCACCGTTTCATGGAGAACAATTCCTTCAAAGAGAAGAATCCCACCCTTGTTAATTTTCCGGTGAAGAATCTAGAGCTAAAAGACTACATCCTTTTGCCAACACCTAAAGAGGAAAAATCTCGGTATGATTTGATTGCAAATGTTGTTCATGACGGTGGTGAAGGGTCGTATAGGGTGTCTGTCCATCGCAAATCGGACCAGCAATGGTATGAGATGCAGGACCTGCACGTATCGGAAACTCTTCCTCAGATGGTTGCGCTCTCAGAGGCTTACACACAAATATATGAGCAGCAGAGGTGAAGCAAATGAGGTTTTGATGCCGTGGACTTTTTGTTCCGCATTTTGAGATTTAATGGAACTGGAGCAGATAACTAATTTATTCTTTTGTAATACTTGAATCCTAGAGAGTTGATATAGAATTTAAGTTATAGTTATGGATGCGCTCCCCAAGGCCTACATGCGGATATAAGAGCAGAGAGCTGAGGTGAGGTTGATGCCGAGGACTTTTTGTGCCGGTGGTGGTGAATTGTTTGCTTACCAATGTGGAATTGGAGCGAAATAAGTAATGTATTCCTTTTTGTAATACTTGGAATCC

Network for GWHGAAZE006586

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02148.20	zf-UBP	86	147	1.50E-13
PF00443.30	UCH	187	482	8.20E-37

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K12847	USP39, SAD1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000245	biological_process	spliceosomal complex assembly
GO:0006397	biological_process	mRNA processing
GO:0016579	biological_process	protein deubiquitination
GO:0008270	molecular_function	zinc ion binding
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.061
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.075
	SRR3591711	White flower	0.077
	SRR3591712	Green floral bud	0.199
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.467
	SRR8316896	Juvenile bud stage	2.026
	SRR8316897	Juvenile bud stage	0.039
	SRR8316894	Third green stage	0.885
	SRR8316900	Third green stage	0.985
	SRR8316901	Third green stage	1.661
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.331
	SRR8316903	Complete white stage	0.199
	SRR8316902	Silver flowering stage	0.020
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.100
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.015
	SRR6706287	Light intensity 50%	1.187
	SRR6706288	Light intensity 20%	0.957
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.393
	CNS0095593	Slightly white alabastrum(diploid) 2	0.904
	CNS0095594	Slightly white alabastrum(diploid) 3	0.823
	CNS0095595	Whole white alabastrum(diploid) 2	0.899
	CNS0095596	Whole white alabastrum(diploid) 3	1.189
	CNS0095597	Whole white alabastrum(diploid) 4	0.886
	CNS0095598	Silvery flower (diploied) 1	0.583
	CNS0095599	Silvery flower (diploied) 2	0.482
	CNS0095600	Silvery flower (diploied) 3	0.119
	CNS0095601	Golden flower (diploid) 1	0.456
	CNS0095602	Golden flower (diploid) 2	0.120
	CNS0095603	Golden flower (diploid) 3	0.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.360
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.799
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.524
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.979
	CNS0095610	Silvery flower (tetraploid) 1	0.033
	CNS0095611	Silvery flower (tetraploid) 2	0.614
	CNS0095612	Silvery flower (tetraploid) 3	0.138
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.268
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.051
	CRR073298	Stem 2	1.821
	CRR073299	Stem 3	0.941
	CRR073300	Leaf 1	1.031
	CRR073301	Leaf 2	0.800
	CRR073302	Leaf 3	0.962
	CRR073303	Juvenile bud 1	0.377
	CRR073304	Juvenile bud 2	0.097
	CRR073305	Juvenile bud 3	0.082
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.091
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.172
	CRR073315	Gold flowering 1	1.246
	CRR073316	Gold flowering 2	3.195
	CRR073317	Gold flowering 3	1.250
	CRR073318	Tawny withering 1	0.569
	CRR073319	Tawny withering 2	0.311
	CRR073320	Tawny withering 3	0.122