Gene detail

Detail information of GWHGAAZE006582

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010646155.1	PREDICTED: anaphase-promoting complex subunit 4-like isoform X1 [Vitis vinifera]
Swissprot	tr\|O65418\|APC4_ARATH	Anaphase-promoting complex subunit 4
trEMBL	tr\|E0CVY8\|E0CVY8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23321.3}
TAIR10	AT4G21530.1	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28123711	28144615	+
GWHAAZE00000002	mRNA	28123711	28144615	+
GWHAAZE00000002	exon	28123711	28123786	+
GWHAAZE00000002	exon	28124265	28124315	+
GWHAAZE00000002	exon	28124536	28124627	+
GWHAAZE00000002	exon	28125049	28125132	+
GWHAAZE00000002	exon	28125554	28125793	+
GWHAAZE00000002	exon	28127673	28127824	+
GWHAAZE00000002	exon	28128066	28128226	+
GWHAAZE00000002	exon	28128569	28128669	+
GWHAAZE00000002	exon	28128756	28128830	+
GWHAAZE00000002	exon	28130007	28130255	+
GWHAAZE00000002	exon	28131119	28131201	+
GWHAAZE00000002	exon	28131427	28131525	+
GWHAAZE00000002	exon	28132334	28132438	+
GWHAAZE00000002	exon	28132828	28132969	+
GWHAAZE00000002	exon	28136179	28136409	+
GWHAAZE00000002	exon	28136493	28136645	+
GWHAAZE00000002	exon	28137333	28137414	+
GWHAAZE00000002	exon	28140349	28140554	+
GWHAAZE00000002	exon	28144529	28144615	+
GWHAAZE00000002	CDS	28123711	28123786	+
GWHAAZE00000002	CDS	28124265	28124315	+
GWHAAZE00000002	CDS	28124536	28124627	+
GWHAAZE00000002	CDS	28125049	28125132	+
GWHAAZE00000002	CDS	28125554	28125793	+
GWHAAZE00000002	CDS	28127673	28127824	+
GWHAAZE00000002	CDS	28128066	28128226	+
GWHAAZE00000002	CDS	28128569	28128669	+
GWHAAZE00000002	CDS	28128756	28128830	+
GWHAAZE00000002	CDS	28130007	28130255	+
GWHAAZE00000002	CDS	28131119	28131201	+
GWHAAZE00000002	CDS	28131427	28131525	+
GWHAAZE00000002	CDS	28132334	28132438	+
GWHAAZE00000002	CDS	28132828	28132969	+
GWHAAZE00000002	CDS	28136179	28136409	+
GWHAAZE00000002	CDS	28136493	28136645	+
GWHAAZE00000002	CDS	28137333	28137414	+
GWHAAZE00000002	CDS	28140349	28140554	+
GWHAAZE00000002	CDS	28144529	28144615	+

Transcript Sequence
>GWHTAAZE006590 ATGGAAAGTGATGAAGAAGCTCAGCGAGTCCTCCCATTTCAGCTTCAATTCGACAAACCAATTGCTTCTCAGGTGTCGCCATTTGAGAATGGTGCATTGCAGTGGATTGAGTTTGGATTTTGGGTTGGAAGGTGCATAACATCCTTATGCTGGAATCCTGATGGTAAATCAATAGCTGTTGGGCTTGAAGATGGGACCATTTCATTGCATGACGTCGAGAATGGAAAGCTATTGCGAAGCATAAAATCCCACACTGTTGCTGTTGTGTGTCTCAATTGGGAGGATGATGGACAAAAAATAGCAGATGAAAATGATAACATATCGACTTATGAAGACCGCATTTCTCGTTTCTTTCCTCCCCCCCCAAGAGCTCCTCGGATGCCTGGTCTGGTGCCTGGGGATACTGGGTTCATGGATGATGGTGAAGATTCATTTCAAGAGCTATCAAATTATTCACATCAACGATTTAACATCCTATGCAGTGGGGACAAAGGTGGACTCATCTGTTTTAGTATATTTGGCATATTCCCAATAGGAAAAATTGTGGCTTTGTCAAAAGATCTTTGTCATTTGATAGTCATGTGCTTCAGCGAACTTTCCGAAGGAAGGGTGGAACAAAGCAACAGACGAGTGCCTGGACAGGATTTACCTGGTTTCCATTGCTTGATGCTTGATACTTCAATATTTTTTAAGAGGAAAAACGAGCTTCACCAGGTGGCTCAGCAAGCATCTAACATTGAGGATTTGACTGAAGTAATCAGGACATCAATTTCAGTCATGTGTAAGCAATGGTCTGACGCCATGCGTACCTTTCACGAGAAATTTGATTCTCTATCTACTTTGATCATCGACCATGGACTGGACTCGACACCTCAAGAGGAGTTTCTAAGTCTTCTAGGTGGTGCTCGAACAAGTCCCCCAGTTCATCAATTTCTAGTCAATTCACTTGGTGAAGTGGGTCTCAAGAGGGTAGCAAAGGTGGTTTGTGGTGCCGGAAAAGACCTTCAGCTTATTGTTCTTGATCATCTGCAGCCTGCTGCAGAAATGATTGGATTTAGAATGGGAGAACTGAGAGGCCTTTCAAGATGGCGAGCACGTTACCGAGGAATTGGTTTGGATGAGAAACTAATTGATAAGGCAGCAGAAAAAGCTGGGATTTTTCTCATACAAGTTGAACGATTTATGAAGGTTCTATCCTCAGCAGTGCAGCAGGTATGCTTTTATTTGCTGTATTTTGTCTTTTCCCCCTTTTCTGAATTGAAATATCCTTGGGTGTGGGAATTTTCAAATTTCTTCAGCTGGCTTCTGAAATCTGTGAAGATATTAATGTCAGAACCAAGTGATCAGCTTTTACCCTTCAGTAGTGAACTTGTCATTGTATTTTTGAAGTTTCTGTACGATCAAGATCCCATCAAGCAGTTGCTTGAACTTTCTGAAGCTGATCACAATATTGAAGTAGATATGGAAACAATGCAAAGAGTTAGAGAATTGGCTCATTTTGGGGGTTTCTTAGATTGCCAATACTTGCAAAGGACATTGGCTAAAGAATTTCAACAACTGGAGTCTTGTTTCAAGGAGGCCTTTGAGATGCCTTTCACTACGATTTCCAAGAATATACTTTGTAAGGATTTGTTGCCACTGTTTCCTATTTCATCTGCACCAATGTCTGTGTCGTCCTCCATTATTCCTACTTCAGTTTCATACTACCAGGAAGCTCCTCAGGATCGTTCTATGAACCAAGCATGTCCAAAACGGCTCGTTGATTACGTCTCATTCAGAATACCTGATGACTCCTTTTCAAATTTAACAAATTGCATCGGCATGGCAAGGGGGTTAATTCGTGATCTGGGCAGTACAGATAAGGGGTATAATACTTCACTAGAAGCAGTTTTGTTATGTATTCCTTATGGCTATCACTGTGCGGATCTCTCTCTGTATAAAGAAAGTCAAATTGTGCTGTTATTAAATGAAACATCCAGCTCTTCTGAAAGCTCTGGAAATGCATGTATGATGATTGTGCAAGCGAGTGACCTTCCATTTGCTTCAGTTACAAGATCCACTTGTTTGAACTATTGGAATTTGGATGAACTCAAGGACTCTATTGTGTTCTTGCAAATGGAGAATGAAAAGGTTAGAGGTATTCCTCACACTGTAATTGCTCCGTTAGCAGTTAGTGAGGAGAGACAATGTCTGGGAGGAGAGTCGACACGAACAAAGGAAAGGAGAGACGACGGACAGAGATGGAGAAGCAGCAATGACGAACGACAGAGAGGAGAGACGACGTGCAGAGCAGCGTCGACGGCGGCTGTGATACGTCGGAGAGAGGAGAACAGAGGAGAGACGACGTGCCTAGGAGAGTCGACGGTCGGAGGAGAAGATAACGAGGATTTGGTGGCTTTGGAGAAGGACTATGAGGAGGTTGGTGCTGAGGGGGCTAAGGATGATGGTGATGAAGGGGATGAGTACTGA

Network for GWHGAAZE006582

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.8	ANAPC4_WD40	43	95	2.30E-12
PF12896.8	ANAPC4	220	404	4.60E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03351	APC4	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.663
	SRR3591706	second leaf	3.510
	SRR3591707	mature leaf	2.807
	SRR3591708	Shoot apex	9.368
	SRR3591709	Stem	4.795
	SRR3591710	White floral bud	1.693
	SRR3591711	White flower	1.893
	SRR3591712	Green floral bud	3.300
	SRR3591713	Yellow flower	1.590
SRP173429	SRR8316895	Juvenile bud stage	4.288
	SRR8316896	Juvenile bud stage	5.109
	SRR8316897	Juvenile bud stage	2.738
	SRR8316894	Third green stage	2.553
	SRR8316900	Third green stage	4.867
	SRR8316901	Third green stage	4.665
	SRR8316898	Complete white stage	1.545
	SRR8316899	Complete white stage	5.742
	SRR8316903	Complete white stage	3.020
	SRR8316902	Silver flowering stage	1.281
	SRR8316904	Silver flowering stage	1.611
	SRR8316905	Silver flowering stage	0.711
	SRR8316906	Gold flowering stage	3.548
	SRR8316907	Gold flowering stage	2.069
	SRR8316908	Gold flowering stage	2.186
SRP132670	SRR6706286	Control	2.670
	SRR6706287	Light intensity 50%	2.526
	SRR6706288	Light intensity 20%	3.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.886
	CNS0095593	Slightly white alabastrum(diploid) 2	2.871
	CNS0095594	Slightly white alabastrum(diploid) 3	3.400
	CNS0095595	Whole white alabastrum(diploid) 2	1.830
	CNS0095596	Whole white alabastrum(diploid) 3	1.875
	CNS0095597	Whole white alabastrum(diploid) 4	1.266
	CNS0095598	Silvery flower (diploied) 1	2.905
	CNS0095599	Silvery flower (diploied) 2	2.884
	CNS0095600	Silvery flower (diploied) 3	3.688
	CNS0095601	Golden flower (diploid) 1	1.888
	CNS0095602	Golden flower (diploid) 2	3.849
	CNS0095603	Golden flower (diploid) 3	3.561
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.811
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.196
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.138
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.341
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.166
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.697
	CNS0095610	Silvery flower (tetraploid) 1	4.357
	CNS0095611	Silvery flower (tetraploid) 2	6.057
	CNS0095612	Silvery flower (tetraploid) 3	4.357
	CNS0095613	Golden flower (tetraploid) 1	2.273
	CNS0095614	Golden flower (tetraploid) 2	4.245
	CNS0095615	Golden flower (tetraploid) 3	3.545
CRA001975	CRR073297	Stem 1	4.072
	CRR073298	Stem 2	3.238
	CRR073299	Stem 3	3.094
	CRR073300	Leaf 1	4.046
	CRR073301	Leaf 2	3.073
	CRR073302	Leaf 3	2.706
	CRR073303	Juvenile bud 1	1.361
	CRR073304	Juvenile bud 2	1.999
	CRR073305	Juvenile bud 3	2.094
	CRR073306	Third green 1	0.482
	CRR073307	Third green 2	0.344
	CRR073308	Third green 3	0.443
	CRR073309	Second white 1	1.028
	CRR073310	Second white 2	1.777
	CRR073311	Second white 3	0.803
	CRR073312	Silver flowering 1	0.758
	CRR073313	Silver flowering 2	0.728
	CRR073314	Silver flowering 3	0.874
	CRR073315	Gold flowering 1	1.255
	CRR073316	Gold flowering 2	2.820
	CRR073317	Gold flowering 3	2.110
	CRR073318	Tawny withering 1	2.624
	CRR073319	Tawny withering 2	1.982
	CRR073320	Tawny withering 3	3.381