Gene detail

Detail information of GWHGAAZE006580

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006433401.1	hypothetical protein CICLE_v10000531mg [Citrus clementina]
Swissprot	tr\|Q9LKR3\|MD37A_ARATH	Mediator of RNA polymerase II transcription subunit 37a (Precursor)
trEMBL	tr\|V4TAP7\|V4TAP7_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR46641.1}
TAIR10	AT5G28540.1	heat shock protein 70 (Hsp 70) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	28080477	28084888	+
GWHAAZE00000002	mRNA	28080477	28084888	+
GWHAAZE00000002	exon	28080477	28080727	+
GWHAAZE00000002	exon	28082007	28082221	+
GWHAAZE00000002	exon	28082386	28083111	+
GWHAAZE00000002	exon	28083474	28083583	+
GWHAAZE00000002	exon	28083722	28083804	+
GWHAAZE00000002	exon	28084402	28084888	+
GWHAAZE00000002	CDS	28080477	28080727	+
GWHAAZE00000002	CDS	28082007	28082221	+
GWHAAZE00000002	CDS	28082386	28083111	+
GWHAAZE00000002	CDS	28083474	28083583	+
GWHAAZE00000002	CDS	28083722	28083804	+
GWHAAZE00000002	CDS	28084402	28084888	+

Transcript Sequence
>GWHTAAZE006588 TCGTTAGTGGGTGGTCAGGAAGAATCAAACTCAACTGTGATTGGAATTGATTTGGGGACTACATATTCCTGTGTGGGTGTGTATAGAAATGGACGCGTGGAGATAATAGCCAACGATCAAGGGAACAGAATCACACCATCGTGGGTCGCATTCACAGATACGGAGCGACTGATTGGGGAGGCTGCAAAGAATCAAGCAGCTCTCAATGCTGAACGCACAATATTTGACGTTAAGCGTCTCATCGGAAGAAGGTTTGATGATCCAGAGGTTCAAGGAGACATGAAAATGTTACCCTATAAGATAGTGGACAAAGAGGGAAAGCCTTACATAGAGGTGAAGATCAAAGATGGTGAGGTTAAGGTTTTTAGCCCTGAGGAGATCAGCGCTATGATACTTGGGAAGATGAAGGAGACAGCGGAGTCCTATTTGGGAAAGAAAATTAAGGATGCGGTCGTCACAGTTCCAGCTTACTTCAACGACGCCCAACGGCAAGCCACCAAAGACGCGGGTACCATAGCCGGGCTCAACGTGGTTCGAATAATCAACGAGCCCACAGCTGCAGCAATTGCCTACGGTCTAGACAAGAATGGGGAAAAGGAATCGAACATTTTAGTGTTTGACCTTGGAGGTGGTACATTTGACGTGAGCATCTTGACTATTGATGATGGAGTTTTCGAGGTTCTTGCCACCAGTGGAGACACCCACTTAGGAGGAGAAGACTTTGATCATAGGATAATGCAGTATTTCATCAAACTAATTAAAAAGAAGCACAATAAGGACATTAGCAATGATAATAAGGCTTTAGGTAAGCTTAAAAAGGAGTGTGAGAGAGCCAAGAGGGCCTTGAGTAGCCAACACCAAGTACGGGTCGAGATTGAGTCGCTTTTCGACGGGGTTGACTTTTCAGAGTCATTGACTAGGGCGAGGTTCGAAGAATTGAATATAGATTTGTTCAAAAAGACGATGGGGCCCGTGATGAAGGCAATGAAGGACAAGGGTTTGAAGAAGAACGAAGTGGATGAGATTGTGCTTGTTGGTGGGAGCACTAGGATTCCAAAGGTGCAAAAGCTTTTGAAGGATTACTTTGATGGTAAAGAACCAAACAAGGGTGTTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAAGGCGGAATCCTTAGTGGCGCAGGTGGCACAGAAATGCAAGGGATGATTTTGCTTGATATTGCTCCCTTGAGTTTGGGGATTGAAACTGTTGGTGGGGTAATGACTAAATTGATCCCAAGAAACTCAGTTATCCCAACCAAGAAGTCTCAGGTGTATGAAGGCGAAAGGAGCTTGACTAAAGATTGCCACGAACTTGGACAGATTGAATTATCAAGCATTCCACCAGCTCCAAGGGGTGTGCCTCAAATAGAGGTGACATTTGAGGTAGACGTAAATGGCATACTACACGTAAAGGCAGAGGATAAGGCAGGAAAGAAGTCACAATCCATAACCATAAGCAACGACAAGGGTCGTTTGAGCAAAGAGGAGATTGACCAAATGGTTAAAGAAGCGGAGGAGTTTGCAGAGGAGGACAAGAAGGTTAAAGAGAGGATCGACGCCAAAAACAACCTCGAGACTTACATTTACAACATGAAGAGCACCATTAAAGACAAGCTGGCTGATAAGATCGATGGTGACGATAAAGAGAAGATCGAGAGCGCGCTAAACAAGGGTCTTGAATGGTTGGAAAATGAGAGTCAAAATGCAGAGAAAGAAGAGTTGGAAGAGAAGATGAAGGATATTGAAGCGGTCTGTAATCCTATTATAAAACAGGCTTATGATAATAATAATGGTGGTAGTTATGAAGATGAAGATGAAGAGCCTAATTATGATTTGTAG

Network for GWHGAAZE006580

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.21	HSP70	13	604	2.00E-243

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09490	HSPA5, BIP	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.701
	SRR3591706	second leaf	0.646
	SRR3591707	mature leaf	0.423
	SRR3591708	Shoot apex	1.878
	SRR3591709	Stem	0.917
	SRR3591710	White floral bud	0.758
	SRR3591711	White flower	0.437
	SRR3591712	Green floral bud	0.263
	SRR3591713	Yellow flower	0.660
SRP173429	SRR8316895	Juvenile bud stage	0.570
	SRR8316896	Juvenile bud stage	0.642
	SRR8316897	Juvenile bud stage	0.053
	SRR8316894	Third green stage	0.195
	SRR8316900	Third green stage	0.290
	SRR8316901	Third green stage	0.204
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.028
	SRR8316903	Complete white stage	0.108
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.049
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.128
	SRR6706287	Light intensity 50%	0.264
	SRR6706288	Light intensity 20%	0.103
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.500
	CNS0095593	Slightly white alabastrum(diploid) 2	0.380
	CNS0095594	Slightly white alabastrum(diploid) 3	0.687
	CNS0095595	Whole white alabastrum(diploid) 2	0.117
	CNS0095596	Whole white alabastrum(diploid) 3	0.219
	CNS0095597	Whole white alabastrum(diploid) 4	0.032
	CNS0095598	Silvery flower (diploied) 1	0.669
	CNS0095599	Silvery flower (diploied) 2	0.481
	CNS0095600	Silvery flower (diploied) 3	0.179
	CNS0095601	Golden flower (diploid) 1	2.064
	CNS0095602	Golden flower (diploid) 2	0.826
	CNS0095603	Golden flower (diploid) 3	0.684
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.430
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.552
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.130
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.236
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.150
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.047
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.030
CRA001975	CRR073297	Stem 1	0.664
	CRR073298	Stem 2	0.180
	CRR073299	Stem 3	0.219
	CRR073300	Leaf 1	0.034
	CRR073301	Leaf 2	0.205
	CRR073302	Leaf 3	0.192
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.028
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.043
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.057
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.037
	CRR073317	Gold flowering 3	0.013
	CRR073318	Tawny withering 1	0.489
	CRR073319	Tawny withering 2	0.237
	CRR073320	Tawny withering 3	0.063