Gene detail

Detail information of GWHGAAZE006562

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002316674.1	0	hypothetical protein POPTR_0011s03920g [Populus trichocarpa]
Swissprot	tr\|Q9SXB8\|Y1133_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 (Precursor)
trEMBL	tr\|B9HYQ3\|B9HYQ3_POPTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR10	AT1G11330.1	2E-175	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	27779520	27785078	+
GWHAAZE00000002	mRNA	27779520	27785078	+
GWHAAZE00000002	exon	27779520	27780765	+
GWHAAZE00000002	exon	27780953	27781060	+
GWHAAZE00000002	exon	27781145	27781312	+
GWHAAZE00000002	exon	27781968	27782244	+
GWHAAZE00000002	exon	27782497	27782647	+
GWHAAZE00000002	exon	27782736	27783016	+
GWHAAZE00000002	exon	27784853	27785078	+
GWHAAZE00000002	CDS	27779520	27780765	+
GWHAAZE00000002	CDS	27780953	27781060	+
GWHAAZE00000002	CDS	27781145	27781312	+
GWHAAZE00000002	CDS	27781968	27782244	+
GWHAAZE00000002	CDS	27782497	27782647	+
GWHAAZE00000002	CDS	27782736	27783016	+
GWHAAZE00000002	CDS	27784853	27785078	+

Transcript Sequence
>GWHTAAZE006570 ATGTCTCTTCTTCAATCCCTTCTTCTAATACTCCATTGTTTCTTTTTAGAGTTCTGCATTTCCACAGACACCATTACATCCACTCAATTCATCAAAGACTATGAAACTATAGTCTCCAATGGCTCAGTTTTCAAGTTAGGATTTTTCACCCCTCCTAATACTACGAATCGCTACGTGGGTATCCTTTACAACATCCCTATAACAACCCCAGTATGGGTAGCTAATAAAAACAAGCATTTGAATGATTCTAATGGGGTTGTTACCATATCCGAAGATGGCAATCTTGTAGTACTAGATGGGCAAAACCAGATAATTTGGTCTTCCAATGTTTCAAATACTACAAAGAGCTCAATCGCGCAGCTTTTGGATACCGGGAATTTAGTCTTGCGAGATAATTCATCTGGAAAGATATTGTGGCAGAGTTTTGAAAATCATTCGGATTCCTTTTTGCAGAAGATGGAGATTAGTGATGGGAAGAATCGATTAACATCGTGGAAAAGTCTTTCTGATCCATCAACTGGTACCTTTTCAGCCGGTCTTGATACTTCTAACATTCCACAATTCGTAGTTTATAATAATAGTAAGCCATATTGGCGAAGCGGTCCTTGGAATGGTCAAATCTTCATTGGGATACCCAACATGGGTTCTGTTTACCGCAATCGGTTCAATCTTGTAGATAACAAAGAAGGGAGCGCGTACTTGACTTTCACGTATGCGAACGAGTCTATCATGTATTTTCGCTTGAATCCAGAGGGGAGTTTAGTAGAAAAGTATTGGTATGAAGGGAAGGGAGATTGGGAGGTTCTTTGGGCAGGTCCAGAGGACGAGTGTGATCTTTATGGAAAATGTGGACAGTTTGGAAGTTGCCGTTGGAAGGGTGAGCTGATTTGTACTTGCTTGAATGGATTTGAGCCAAATAATTTGGAGGAATGGAATAGGAATAATTTTACTAGTGGATGTGTGAGGAGGGTACCTTTGCAGTGTCAGAGAAATAGTAGCACTGGCCAAGAGAGAAAGGGAGACGGGTTTTTGAAGCTTAGTGCTGTGAAAGTACCAGATTTTGGCCAATGGTCAAGTGCTGATGATAATTGTGGTAGTGTGTGTTTGAGTGATTGCTCGTGTATCGCTTATTCGTATTATACGGGGATTGGGTGTATGCATTGGCATAATAGCTTAATTGACATACGAAGATTCTCTGGCAGTAATGGTGTGGATCTTTACATTCGAGTGTCATACTCAGAGCTTGATAAAAAGAGAAATATGAAAGTAGTTATTGCAGTAACTGTGGTTATTGGGTCAATTATCATTGCCATAAGCGTGTACTTATCATGGAAGTGGATGACCAAAACAAAAGGAATGAACCAAGAAAGTGAGGTCTTATTTAAGAGAGGGGAGTTCTATCAAGATTATTCAAACGAAAGCCTGCCTCAACAAGCTAAACTTGAAGAACTACCAGTGAACACTTTCAATGATCTTGCAATTGCAACAGACAATTTTCACTCTGCCAATAAACTCGGCCAAGGTTCTCCAGTTACAACTCTATCCTACTTGTTCATTTCAGATAAAAACAATAAAAAACACCTAGATTGGGCTAAACGAGCTAATATCATTGAAGGAATCGGACGAGGCCTCTTGTATCTCCACAGAGATTCCAGACTAAAGATTATTCATAGAGATCTAAAGCCAAGTAATATTTTGCTAGATAAGGAACTGAACCCGAAAATCTCAGACTTCGGCATGGCAAGAATTTTCAGAGGGAATCAAGATCAAGCCAATACTAAGAGGGTTGTTGGAACATATGGATATATGGCCCCTGAATACGCAATGGAGGGTCGATTTTCAGAAAAATCCGATGTCTTTAGCTTGGGAGTTTTGTTACTGGAGATAGTTAGTGGAAGAAGGAACACTAGCTTTTATCACGACGAGTTCACTTTAAGCCTTTTAGGATATGCGTGGAAGTTGTGGAATGAAGAGAAGGTTTCAGAATTAATTGATCCCAGGATATCTAATCCTTGTTTCCAAATTGAGATCTTGCGATATATTCATGTAGGATTGTTGTGTGTGCAAGAATTTGCAAAAGACAGACCAAATATTTCTATTTTTCTGTCCATGCTTAGTAGGGAAATTGCAGATCTTCCTACTCCCAAGCAGCCTGCATTTACTGAAAGGCAGTCCAATTCAGTGAAGGAAGAGATTCAAGAAAATTGTTCTGTAAACAGTGCACTTTTCAGGGCAAACATCGTTCGAAAGGTCATTGCAAGCAATTCTCATGGTCCGATTGAATTGATCGATATGGAGTACTCGAAATATCTGTGCATCGATGTCGATGGTGGTGTAATCATTGTTATGGCAAGTGAGATGGAACTGTTCAAGGCCGCAATGAGGGGGCGACTTCTGCCCCAAAACGGGTACCTTATGTCCCGCATAACTTGGCCGCAGTCAAAGAGACGTTTGTAG

Network for GWHGAAZE006562

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	69	166	2.00E-28
PF00954.21	S_locus_glycop	198	306	6.00E-31
PF08276.12	PAN_2	338	395	1.20E-14
PF00069.26	Pkinase	524	634	2.20E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0048544	biological_process	recognition of pollen
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.044
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.073
	SRR3591709	Stem	0.027
	SRR3591710	White floral bud	0.298
	SRR3591711	White flower	0.577
	SRR3591712	Green floral bud	0.252
	SRR3591713	Yellow flower	1.313
SRP173429	SRR8316895	Juvenile bud stage	0.086
	SRR8316896	Juvenile bud stage	0.247
	SRR8316897	Juvenile bud stage	0.218
	SRR8316894	Third green stage	0.110
	SRR8316900	Third green stage	0.136
	SRR8316901	Third green stage	0.103
	SRR8316898	Complete white stage	0.075
	SRR8316899	Complete white stage	0.111
	SRR8316903	Complete white stage	0.125
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.056
	SRR8316905	Silver flowering stage	0.014
	SRR8316906	Gold flowering stage	0.426
	SRR8316907	Gold flowering stage	0.250
	SRR8316908	Gold flowering stage	0.644
SRP132670	SRR6706286	Control	0.139
	SRR6706287	Light intensity 50%	0.045
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.240
	CNS0095593	Slightly white alabastrum(diploid) 2	0.129
	CNS0095594	Slightly white alabastrum(diploid) 3	0.397
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.050
	CNS0095598	Silvery flower (diploied) 1	0.179
	CNS0095599	Silvery flower (diploied) 2	0.151
	CNS0095600	Silvery flower (diploied) 3	0.032
	CNS0095601	Golden flower (diploid) 1	0.311
	CNS0095602	Golden flower (diploid) 2	0.205
	CNS0095603	Golden flower (diploid) 3	0.120
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.040
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.066
	CNS0095613	Golden flower (tetraploid) 1	0.114
	CNS0095614	Golden flower (tetraploid) 2	0.141
	CNS0095615	Golden flower (tetraploid) 3	0.027
CRA001975	CRR073297	Stem 1	0.038
	CRR073298	Stem 2	0.024
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.055
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.077
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.040
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.282
	CRR073317	Gold flowering 3	0.039
	CRR073318	Tawny withering 1	0.909
	CRR073319	Tawny withering 2	0.974
	CRR073320	Tawny withering 3	0.064