Gene detail

Detail information of GWHGAAZE006521

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007147738.1	1.4725E-152	hypothetical protein PHAVU_006G150700g [Phaseolus vulgaris]
Swissprot	tr\|Q9ZS88\|DER22_ARATH	1E-145	Derlin-2.2
trEMBL	tr\|V7BP42\|V7BP42_PHAVU	5E-153	Uncharacterized protein {ECO:0000313\|EMBL:ESW19732.1}
TAIR10	AT4G04860.1	1E-106	DERLIN-2.2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	27065270	27068359	+
GWHAAZE00000002	mRNA	27065270	27068359	+
GWHAAZE00000002	exon	27065270	27065437	+
GWHAAZE00000002	exon	27065749	27065848	+
GWHAAZE00000002	exon	27065961	27066175	+
GWHAAZE00000002	exon	27066330	27066413	+
GWHAAZE00000002	exon	27067999	27068359	+
GWHAAZE00000002	five_prime_UTR	27065270	27065338	+
GWHAAZE00000002	CDS	27065339	27065437	+
GWHAAZE00000002	CDS	27065749	27065848	+
GWHAAZE00000002	CDS	27065961	27066175	+
GWHAAZE00000002	CDS	27066330	27066413	+
GWHAAZE00000002	CDS	27067999	27068181	+
GWHAAZE00000002	three_prime_UTR	27068182	27068359	+

Transcript Sequence
>GWHTAAZE006529 TGCAAAAGTTGTTGTGGTTAGGGTTTGGGGAATTTGGGAGTTTGATTGATTAATTGGAGGGTAAAATTAATGGCTCAAGCAGTAGAAGAATGGTACAAGCAGATGCCTATCATCACCCGTTCGTATCTCACCGCCGCAGTTGTCACCACCATTGGTTGCTCCCTCGAAATAATTTCACCGTATAAATTGTACTTGAACCCGAGGTTGGTTGTCAACCACTATCAATTCTGGCGCCTAGTTACAAATTTCTTCTACTTCAGGAAGATGGACTTGGATTTTCTGTTCCATATGTTCTTTCTGGCTCGATACTGCAAGCTTCTTGAAGAGAATTCATTCAGGGGAAGAACTGCAGATTTCTTTTACATGCTTTTATTTGGTGCCACTGTTTTGACCGGGATCGTACTTATCGGGGGAATGATACCCTATGTCTCAGAGTCCTTCGCAAAAATCATCTTCCTAAGCAATTCATTGACGTTCATGATGGTTTATGTGTGGAGCAAGCAAAATCCGTTTATCCATATGAGTTTCCTGGGCCTCTTTACTTTTACAGCAGCTTACCTTCCATGGGGAATGATTGCTGGTCATGCCTACTACTTTCTTGAAGACGTGTATCCCCGAATGAGTGGTCGCCGACCCCTAAAAACACCGTCATTCATTAGATCACTGTTTGCAGAAGAGCCTGTAGTGGTGGCTCGGCCTGCAAATGTGAGATTTGCTGCTCCACCTGTTGATGAACTTCACCAAAATTGATTGGAATTTTGGATTCGTAGACTACTGGAAGCTGAGACTTTCTTGTGTTAGTAACCCCTAAAAACAATGTTCCGTAAGTATGAAAAAGACAATTGATTGGTATGGTGCTAGTTATGTTCATTATGCTTGTCTTCATTCCGTATCATGTAAACTCTTCTGGTCATGCATGGTGTTGCTG

Network for GWHGAAZE006521

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04511.16	DER1	12	166	4.80E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13989	DERL2_3	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.243
	SRR3591706	second leaf	36.550
	SRR3591707	mature leaf	56.623
	SRR3591708	Shoot apex	45.523
	SRR3591709	Stem	74.382
	SRR3591710	White floral bud	106.002
	SRR3591711	White flower	147.440
	SRR3591712	Green floral bud	92.250
	SRR3591713	Yellow flower	207.036
SRP173429	SRR8316895	Juvenile bud stage	38.711
	SRR8316896	Juvenile bud stage	58.633
	SRR8316897	Juvenile bud stage	23.831
	SRR8316894	Third green stage	25.058
	SRR8316900	Third green stage	84.273
	SRR8316901	Third green stage	81.583
	SRR8316898	Complete white stage	53.032
	SRR8316899	Complete white stage	117.209
	SRR8316903	Complete white stage	74.766
	SRR8316902	Silver flowering stage	61.708
	SRR8316904	Silver flowering stage	76.947
	SRR8316905	Silver flowering stage	46.594
	SRR8316906	Gold flowering stage	129.528
	SRR8316907	Gold flowering stage	128.957
	SRR8316908	Gold flowering stage	107.042
SRP132670	SRR6706286	Control	51.522
	SRR6706287	Light intensity 50%	57.165
	SRR6706288	Light intensity 20%	55.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.910
	CNS0095593	Slightly white alabastrum(diploid) 2	59.889
	CNS0095594	Slightly white alabastrum(diploid) 3	51.325
	CNS0095595	Whole white alabastrum(diploid) 2	51.847
	CNS0095596	Whole white alabastrum(diploid) 3	58.449
	CNS0095597	Whole white alabastrum(diploid) 4	45.978
	CNS0095598	Silvery flower (diploied) 1	76.390
	CNS0095599	Silvery flower (diploied) 2	51.900
	CNS0095600	Silvery flower (diploied) 3	92.605
	CNS0095601	Golden flower (diploid) 1	55.336
	CNS0095602	Golden flower (diploid) 2	134.980
	CNS0095603	Golden flower (diploid) 3	132.851
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.931
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.125
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.737
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.487
	CNS0095609	Whole white alabastrum(tetraploid) 3	73.027
	CNS0095610	Silvery flower (tetraploid) 1	73.017
	CNS0095611	Silvery flower (tetraploid) 2	62.556
	CNS0095612	Silvery flower (tetraploid) 3	59.911
	CNS0095613	Golden flower (tetraploid) 1	48.623
	CNS0095614	Golden flower (tetraploid) 2	71.132
	CNS0095615	Golden flower (tetraploid) 3	95.282
CRA001975	CRR073297	Stem 1	33.658
	CRR073298	Stem 2	35.316
	CRR073299	Stem 3	37.949
	CRR073300	Leaf 1	45.952
	CRR073301	Leaf 2	45.436
	CRR073302	Leaf 3	40.074
	CRR073303	Juvenile bud 1	53.131
	CRR073304	Juvenile bud 2	48.119
	CRR073305	Juvenile bud 3	52.164
	CRR073306	Third green 1	29.103
	CRR073307	Third green 2	32.198
	CRR073308	Third green 3	28.540
	CRR073309	Second white 1	45.474
	CRR073310	Second white 2	38.038
	CRR073311	Second white 3	40.046
	CRR073312	Silver flowering 1	59.828
	CRR073313	Silver flowering 2	61.544
	CRR073314	Silver flowering 3	72.705
	CRR073315	Gold flowering 1	20.621
	CRR073316	Gold flowering 2	31.626
	CRR073317	Gold flowering 3	31.358
	CRR073318	Tawny withering 1	31.122
	CRR073319	Tawny withering 2	34.452
	CRR073320	Tawny withering 3	32.519