Gene detail

Detail information of GWHGAAZE006514

Functional Annotation

Database	Orthologs	Annotation
Nr	ACY78680.1	calcium-dependent protein kinase 1 [Panax ginseng]
Swissprot	tr\|P28582\|CDPK_DAUCA	Calcium-dependent protein kinase
trEMBL	tr\|D1MEN6\|D1MEN6_PANGI	Calcium-dependent protein kinase 1 {ECO:0000313\|EMBL:ACY78680.1}
TAIR10	AT4G04720.1	calcium-dependent protein kinase 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26887828	26892167	-
GWHAAZE00000002	mRNA	26887828	26892167	-
GWHAAZE00000002	exon	26887828	26887902	-
GWHAAZE00000002	exon	26887995	26888094	-
GWHAAZE00000002	exon	26888253	26888380	-
GWHAAZE00000002	exon	26888487	26888654	-
GWHAAZE00000002	exon	26889300	26889415	-
GWHAAZE00000002	exon	26890211	26890363	-
GWHAAZE00000002	exon	26890474	26890617	-
GWHAAZE00000002	exon	26891399	26892167	-
GWHAAZE00000002	CDS	26891399	26892167	-
GWHAAZE00000002	CDS	26890474	26890617	-
GWHAAZE00000002	CDS	26890211	26890363	-
GWHAAZE00000002	CDS	26889300	26889415	-
GWHAAZE00000002	CDS	26888487	26888654	-
GWHAAZE00000002	CDS	26888253	26888380	-
GWHAAZE00000002	CDS	26887995	26888094	-
GWHAAZE00000002	CDS	26887828	26887902	-

Transcript Sequence
>GWHTAAZE006522 ATGGGTGGTTGCTTTAGCAAGAACAAGGTTCATCAACCAGATGCAAATGGGTATAGATCTGGAAGAGGTGGTGGTACTACAGCGTACAACCAGAGTTACCAAACCATTGCTGAACAAAGCCAAGAAAAACCCTCAGCCCATCACCAACAAGAGAGGTACAACCATCCACAGCCACAGGTACAACCCCCAGCTCCAGCTCCAGCTCCAGCTCCAGCCCCAGCCCCAGTGAAACCGATTTCCCAAAACCCTAGGCAAGTATACAACACGATATTGGGTAAGCCAATTGAAGACATTAAAGCACACTACACACTTGGTAAAGAATTGGGTAGGGGTCAATTTGGGGTTACTTACCTTTGTACTGAAAAATCAACTGGTCACACTTATGCTTGTAAGTCTATATTGAAAAGAAAGCTTGTTAGTAAGAATGATAAAGAGGATATGAAGAGGGAGGTTCAAATAATGCAACATTTAAGTGGGCAGCCAAATATTGTGGAGTTTAAGGGTTCTTATGAGGATAGGCAATCAGTTCACCTTGTAATGGAACTTTGTGCTGGTGGTGAGCTTTTTGATAGGATTATAGCTCAAGGTCATTATTCTGAAAGAGCTGCTGCCACAATTTGTAGGCAAATTGTGAATGTTGTTCATGTTTGCCACTTTATGGGTGTGTTGCATCGTGATCTTAAGCCTGAGAATTTTTTGCTCTCTAGCAAGGGTGAAGGCGCAATGATAAAGGCAACTGATTTTGGATTGTCTGTCTTCATTGAAGAGGGGAAAGTGTACCGTGATATTGTTGGTAGTGCTTACTACGTTGCTCCAGAAGTGTTGAAGCGTAGTTATGGGAAGGAAATAGATATTTGGAGTGCAGGGGTTATTTTGTATATTCTACTCAGTGGCGTGCCTCCATTTTGGGCTGAAAATGAGAAGGGAATTTTTGATGCCATACTGCAAGGAGAGATTGACTTTGAAAGCCAACCATGGCCATCGATTTCAAACAGTGCAAAAGACCTTGTCCGAAAGATGCTAACACAAGACCCAAGAAGGAGGATTACTTCCACTCAAGTTCTAGAGCACCCATGGATTAGAGAAGGCGGAGAAGCATCAGACAAGCCAATAGATAGTGCAGTGCTCTCTAGAATGAAGCAATTCAGGGCAATGAACAAGCTGAAGAAACTGGCGTTGAAGGTCATTGCGGAAAGCTTGTCCGAAGAAGAAATCAAGGGTCTTAAAGCAATGTTTACAAACATGGACACAGACAAGAGTGGCACGATCACGTATGAGGAATTGAAATCAGGACTGGCCCGGCTCGGGTCAAAGCTGTCAGAAGCCGAAGTCCAGCAACTAATGGAAGCTGCTGATGTGGATGGAAATGGAACGATCGACTACGTTGAATTCATTACTGCTACCATGCATAGGCACAAACTCGAAAGAGGAGAGCATCTATATAAAGCATTTCTGCATTTTGACAGGGATAACAGTGGCTTTATTACGAGAGATGAACTGAAAACAGCCATGAAAGAGTATGGGATGGGTGATGAAGCAACCATCGAGGAAATAATTTCAGAAGTGGACACGGATAATGACGGGAGGATCAATTATGATGAGTTTTGTGCAATGATGAGAAGTGGAGCACCACAACCAGGAAAGCTTTTCTAA

Network for GWHGAAZE006514

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	102	360	7.40E-75
PF13499.7	EF-hand_7	408	468	3.50E-12
PF13499.7	EF-hand_7	478	540	1.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.692
	SRR3591706	second leaf	32.117
	SRR3591707	mature leaf	32.311
	SRR3591708	Shoot apex	50.785
	SRR3591709	Stem	60.973
	SRR3591710	White floral bud	45.217
	SRR3591711	White flower	50.189
	SRR3591712	Green floral bud	39.747
	SRR3591713	Yellow flower	39.023
SRP173429	SRR8316895	Juvenile bud stage	25.742
	SRR8316896	Juvenile bud stage	31.457
	SRR8316897	Juvenile bud stage	14.349
	SRR8316894	Third green stage	15.869
	SRR8316900	Third green stage	39.288
	SRR8316901	Third green stage	34.579
	SRR8316898	Complete white stage	15.269
	SRR8316899	Complete white stage	52.508
	SRR8316903	Complete white stage	29.412
	SRR8316902	Silver flowering stage	18.201
	SRR8316904	Silver flowering stage	27.609
	SRR8316905	Silver flowering stage	14.009
	SRR8316906	Gold flowering stage	47.035
	SRR8316907	Gold flowering stage	42.839
	SRR8316908	Gold flowering stage	55.335
SRP132670	SRR6706286	Control	36.681
	SRR6706287	Light intensity 50%	39.691
	SRR6706288	Light intensity 20%	40.243
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.172
	CNS0095593	Slightly white alabastrum(diploid) 2	22.789
	CNS0095594	Slightly white alabastrum(diploid) 3	19.792
	CNS0095595	Whole white alabastrum(diploid) 2	21.069
	CNS0095596	Whole white alabastrum(diploid) 3	16.221
	CNS0095597	Whole white alabastrum(diploid) 4	16.409
	CNS0095598	Silvery flower (diploied) 1	41.710
	CNS0095599	Silvery flower (diploied) 2	32.038
	CNS0095600	Silvery flower (diploied) 3	47.596
	CNS0095601	Golden flower (diploid) 1	31.779
	CNS0095602	Golden flower (diploid) 2	52.396
	CNS0095603	Golden flower (diploid) 3	45.469
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.109
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.528
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.859
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.810
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.697
	CNS0095610	Silvery flower (tetraploid) 1	44.031
	CNS0095611	Silvery flower (tetraploid) 2	43.534
	CNS0095612	Silvery flower (tetraploid) 3	31.129
	CNS0095613	Golden flower (tetraploid) 1	23.190
	CNS0095614	Golden flower (tetraploid) 2	40.194
	CNS0095615	Golden flower (tetraploid) 3	27.670
CRA001975	CRR073297	Stem 1	34.006
	CRR073298	Stem 2	29.571
	CRR073299	Stem 3	29.762
	CRR073300	Leaf 1	32.510
	CRR073301	Leaf 2	32.014
	CRR073302	Leaf 3	28.989
	CRR073303	Juvenile bud 1	33.440
	CRR073304	Juvenile bud 2	27.791
	CRR073305	Juvenile bud 3	37.382
	CRR073306	Third green 1	17.498
	CRR073307	Third green 2	17.140
	CRR073308	Third green 3	18.007
	CRR073309	Second white 1	11.706
	CRR073310	Second white 2	13.814
	CRR073311	Second white 3	11.534
	CRR073312	Silver flowering 1	10.157
	CRR073313	Silver flowering 2	11.171
	CRR073314	Silver flowering 3	8.706
	CRR073315	Gold flowering 1	15.134
	CRR073316	Gold flowering 2	24.481
	CRR073317	Gold flowering 3	11.382
	CRR073318	Tawny withering 1	37.082
	CRR073319	Tawny withering 2	30.703
	CRR073320	Tawny withering 3	36.854