Detail information of GWHGAAZE006489


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP06028.10unnamed protein product [Coffea canephora]
Swissprottr|P38379|SC61A_PYRSA0Protein transport protein Sec61 subunit alpha
trEMBLtr|A0A068UEG9|A0A068UEG9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313|EMBL:CDP06028.1}
TAIR10AT2G34250.20SecY protein transport family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2639524226399250-
GWHAAZE00000002mRNA2639524226399250-
GWHAAZE00000002exon2639524226395481-
GWHAAZE00000002exon2639624926396384-
GWHAAZE00000002exon2639674626396870-
GWHAAZE00000002exon2639756126397915-
GWHAAZE00000002exon2639801426398241-
GWHAAZE00000002exon2639890726399250-
GWHAAZE00000002CDS2639890726399250-
GWHAAZE00000002CDS2639801426398241-
GWHAAZE00000002CDS2639756126397915-
GWHAAZE00000002CDS2639674626396870-
GWHAAZE00000002CDS2639624926396384-
GWHAAZE00000002CDS2639524226395481-
Transcript Sequence

Network for GWHGAAZE006489

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0076GO:0016020 membrane GOslim:cellular_component
GO:0015031 protein transport GOslim:biological_process
map04152 AMPK signaling pathway
map04261 Adrenergic signaling in cardiomyocytes
map04350 TGF-beta signaling pathway
map04071 Sphingolipid signaling pathway
map04730 Long-term depression
map04390 Hippo signaling pathway
map04145 Phagosome
map04151 PI3K-Akt signaling pathway
map04111 Cell cycle - yeast
map04113 Meiosis - yeast
map03060 Protein export
map04530 Tight junction
map04728 Dopaminergic synapse
map04391 Hippo signaling pathway - fly
map04114 Oocyte meiosis


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10559.10Plug_translocon42766.30E-18
PF00344.21SecY774583.40E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10956SEC61A Protein export map03060
Protein processing in endoplasmic reticulummap04141
Phagosomemap04145

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport
GO:0016020cellular_componentmembrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf99.424
SRR3591706second leaf64.499
SRR3591707mature leaf47.315
SRR3591708Shoot apex68.113
SRR3591709Stem72.774
SRR3591710White floral bud94.865
SRR3591711White flower96.496
SRR3591712Green floral bud108.301
SRR3591713Yellow flower86.081
SRP173429 SRR8316895Juvenile bud stage 50.284
SRR8316896Juvenile bud stage 68.506
SRR8316897Juvenile bud stage 37.796
SRR8316894Third green stage 34.448
SRR8316900Third green stage 111.060
SRR8316901Third green stage 94.708
SRR8316898Complete white stage 50.794
SRR8316899Complete white stage 125.012
SRR8316903Complete white stage 79.632
SRR8316902Silver flowering stage44.740
SRR8316904Silver flowering stage59.613
SRR8316905Silver flowering stage29.593
SRR8316906Gold flowering stage 88.667
SRR8316907Gold flowering stage 84.233
SRR8316908Gold flowering stage 102.186
SRP132670SRR6706286Control58.725
SRR6706287Light intensity 50%65.164
SRR6706288Light intensity 20%67.328
CNP0000432CNS0095592Slightly white alabastrum(diploid) 175.712
CNS0095593Slightly white alabastrum(diploid) 278.600
CNS0095594Slightly white alabastrum(diploid) 365.057
CNS0095595Whole white alabastrum(diploid) 268.666
CNS0095596Whole white alabastrum(diploid) 378.370
CNS0095597Whole white alabastrum(diploid) 459.402
CNS0095598Silvery flower (diploied) 149.402
CNS0095599Silvery flower (diploied) 253.839
CNS0095600Silvery flower (diploied) 3106.718
CNS0095601Golden flower (diploid) 144.947
CNS0095602Golden flower (diploid) 2104.477
CNS0095603Golden flower (diploid) 399.822
CNS0095604Slightly white alabastrum(tetraploid) 183.765
CNS0095605Slightly white alabastrum(tetraploid) 266.483
CNS0095606Slightly white alabastrum(tetraploid) 3118.799
CNS0095607Whole white alabastrum(tetraploid) 154.487
CNS0095608Whole white alabastrum(tetraploid) 253.872
CNS0095609Whole white alabastrum(tetraploid) 3100.017
CNS0095610Silvery flower (tetraploid) 185.392
CNS0095611Silvery flower (tetraploid) 277.054
CNS0095612Silvery flower (tetraploid) 381.350
CNS0095613Golden flower (tetraploid) 146.548
CNS0095614Golden flower (tetraploid) 278.590
CNS0095615Golden flower (tetraploid) 386.476
CRA001975CRR073297Stem 179.740
CRR073298Stem 274.884
CRR073299Stem 3103.141
CRR073300Leaf 196.233
CRR073301Leaf 283.851
CRR073302Leaf 3110.414
CRR073303Juvenile bud 1117.443
CRR073304Juvenile bud 2113.476
CRR073305Juvenile bud 3130.074
CRR073306Third green 192.949
CRR073307Third green 278.074
CRR073308Third green 381.300
CRR073309Second white 1114.846
CRR073310Second white 299.522
CRR073311Second white 394.138
CRR073312Silver flowering 1107.538
CRR073313Silver flowering 2129.841
CRR073314Silver flowering 3102.862
CRR073315Gold flowering 148.894
CRR073316Gold flowering 262.013
CRR073317Gold flowering 353.847
CRR073318Tawny withering 179.780
CRR073319Tawny withering 280.994
CRR073320Tawny withering 387.580