Gene detail

Detail information of GWHGAAZE006473

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG15362.1	0	U4/U6.U5 tri-snRNP-associated 2 [Gossypium arboreum]
Swissprot	tr\|Q9LEW0\|UBP22_ARATH	2E-12	Ubiquitin carboxyl-terminal hydrolase 22
trEMBL	tr\|A5BFT1\|A5BFT1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83206.1}
TAIR10	AT4G22285.1	0	Ubiquitin C-terminal hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26152641	26156235	+
GWHAAZE00000002	mRNA	26152641	26156235	+
GWHAAZE00000002	exon	26152641	26152691	+
GWHAAZE00000002	exon	26153541	26153785	+
GWHAAZE00000002	exon	26154191	26154275	+
GWHAAZE00000002	exon	26154594	26154779	+
GWHAAZE00000002	exon	26154884	26155051	+
GWHAAZE00000002	exon	26155142	26155297	+
GWHAAZE00000002	exon	26155388	26155559	+
GWHAAZE00000002	exon	26155891	26156062	+
GWHAAZE00000002	exon	26156142	26156235	+
GWHAAZE00000002	CDS	26152641	26152691	+
GWHAAZE00000002	CDS	26153541	26153785	+
GWHAAZE00000002	CDS	26154191	26154275	+
GWHAAZE00000002	CDS	26154594	26154779	+
GWHAAZE00000002	CDS	26154884	26155051	+
GWHAAZE00000002	CDS	26155142	26155297	+
GWHAAZE00000002	CDS	26155388	26155559	+
GWHAAZE00000002	CDS	26155891	26156062	+
GWHAAZE00000002	CDS	26156142	26156235	+

Transcript Sequence
>GWHTAAZE006481 ATGGTTGAAGTTCGTAGAGACTGCCCATATCTAGATACAGTCAACCGCCAGGTTTTGGATTTTGATTTTGAGAAGTTCTGTTCCGTGTCTCTTTCAAATTTGAATGTGTATGCATGTTTGGTCTGTGGTAAGTATTTCCAAGGAAGAGGGCAGAAATCTCATGCGTATACTCATAGCCTTGAAGCAGGACACCATGTTTACATCAATCTTCGGACCGAAAAAGTTTATTGCCTACCTGATGGATATGAAATTAATGACCCATCATTAGATGATATTCGACATGTTCTCAATCCAAGATTTAGTAGGGAGCAAGTTGTGCAGCTTGATAGAAACAAGATGTGGTCTAGGGCACTTGATGGTTCTGATTATCTTCCTGGAATGGTCGGACTGAATAACATTAAAGAGACAGATTTTGTGAATGTCACAATTCAGTCTTTAATGCGAGTTACTCCACTGAGGAACTTTTTCCTTATTCCGGAAAACTACAAGCACAGCAAGTCCATACTTGTTCACCGTTTTGGAGAGCTAACGCGAAAGATTTGGCATGCCCGTAACTTCAAGGGACAGGTGAGTCCACATGAGTTCCTGCAGGCAGTTATGAAAGCTAGCAAGAAACGTTTTCGAATTGGAGCACAGTCCGACCCAGTTGAATTTATGTCCTGGCTTCTTAATACACTACATAGAGATCTTAGGACTTCAAAGAGAAGTAGTAGCATAATCCATCGGTGTTTTCAGGGGGAATTGGAGGTTGTGAAAGAGATTCATGGTGGGGCAGAAGGGGATAATAATGTTCTCACAGAGACTAGTAGAATGCCATTCCTAATGCTTGGACTGGATTTACCACCACCGCCTCTTTTTAAAGATGTTATGGAAAAGAATATTATCCCTCAGGTTCCACTTTTTAACATATTGAAGAAGTTTGATGGTGAGTTTGTGACGGAAGTTGTGCGTCCTCGTATAGCAAGGATGAGATATCGCGTTACAAGACTCCCACAGTATCTAATCCTCCACATGTGTCGATTCACCAAGAACAATTTCTTTGTTGAGAAGAATCCCACCCTTGTTAATTTTCCTGTGAAGAATTTAGAGCTGAAGGACTACATTCCTCTGCCAACACCAAAAGAGAAGGAAAAATTGCGAACAAAGTATGATTTGATTGCCAATATTGTTCATGACGGTAAGCCAGGTGAAGGATCGTATAGGGTATTTGTACAGCGCAAATCAGAAGAACTATGGTACGAGATGCAGGATCTGCATGTCTCAGAAACTCTTCCTCAGATGGTCGCACTCTCAGAGGCTTACATGCAGATATACGAGCAGCAGAGATGA

Network for GWHGAAZE006473

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02148.20	zf-UBP	27	88	9.90E-15
PF00443.30	UCH	128	438	9.10E-40

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K12847	USP39, SAD1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0000245	biological_process	spliceosomal complex assembly
GO:0006397	biological_process	mRNA processing
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.207
	SRR3591706	second leaf	19.506
	SRR3591707	mature leaf	20.117
	SRR3591708	Shoot apex	33.175
	SRR3591709	Stem	19.537
	SRR3591710	White floral bud	19.702
	SRR3591711	White flower	25.840
	SRR3591712	Green floral bud	21.288
	SRR3591713	Yellow flower	19.336
SRP173429	SRR8316895	Juvenile bud stage	18.146
	SRR8316896	Juvenile bud stage	24.362
	SRR8316897	Juvenile bud stage	11.501
	SRR8316894	Third green stage	9.173
	SRR8316900	Third green stage	23.281
	SRR8316901	Third green stage	19.852
	SRR8316898	Complete white stage	6.979
	SRR8316899	Complete white stage	28.330
	SRR8316903	Complete white stage	12.815
	SRR8316902	Silver flowering stage	8.057
	SRR8316904	Silver flowering stage	11.340
	SRR8316905	Silver flowering stage	5.028
	SRR8316906	Gold flowering stage	16.624
	SRR8316907	Gold flowering stage	13.056
	SRR8316908	Gold flowering stage	18.209
SRP132670	SRR6706286	Control	11.085
	SRR6706287	Light intensity 50%	12.218
	SRR6706288	Light intensity 20%	13.449
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.598
	CNS0095593	Slightly white alabastrum(diploid) 2	17.467
	CNS0095594	Slightly white alabastrum(diploid) 3	19.205
	CNS0095595	Whole white alabastrum(diploid) 2	17.457
	CNS0095596	Whole white alabastrum(diploid) 3	15.387
	CNS0095597	Whole white alabastrum(diploid) 4	16.228
	CNS0095598	Silvery flower (diploied) 1	26.534
	CNS0095599	Silvery flower (diploied) 2	22.524
	CNS0095600	Silvery flower (diploied) 3	18.284
	CNS0095601	Golden flower (diploid) 1	22.806
	CNS0095602	Golden flower (diploid) 2	23.197
	CNS0095603	Golden flower (diploid) 3	20.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.626
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.458
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.664
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.240
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.038
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.033
	CNS0095610	Silvery flower (tetraploid) 1	23.427
	CNS0095611	Silvery flower (tetraploid) 2	25.620
	CNS0095612	Silvery flower (tetraploid) 3	20.164
	CNS0095613	Golden flower (tetraploid) 1	18.242
	CNS0095614	Golden flower (tetraploid) 2	22.399
	CNS0095615	Golden flower (tetraploid) 3	16.570
CRA001975	CRR073297	Stem 1	17.006
	CRR073298	Stem 2	16.107
	CRR073299	Stem 3	12.469
	CRR073300	Leaf 1	13.645
	CRR073301	Leaf 2	12.336
	CRR073302	Leaf 3	9.488
	CRR073303	Juvenile bud 1	9.909
	CRR073304	Juvenile bud 2	5.875
	CRR073305	Juvenile bud 3	10.200
	CRR073306	Third green 1	2.576
	CRR073307	Third green 2	2.730
	CRR073308	Third green 3	3.854
	CRR073309	Second white 1	3.071
	CRR073310	Second white 2	5.574
	CRR073311	Second white 3	5.029
	CRR073312	Silver flowering 1	4.579
	CRR073313	Silver flowering 2	3.753
	CRR073314	Silver flowering 3	3.097
	CRR073315	Gold flowering 1	11.477
	CRR073316	Gold flowering 2	13.065
	CRR073317	Gold flowering 3	5.656
	CRR073318	Tawny withering 1	10.183
	CRR073319	Tawny withering 2	13.724
	CRR073320	Tawny withering 3	11.227