Gene detail

Detail information of GWHGAAZE006464

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095943.1	0	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Sesamum indicum]
Swissprot	tr\|Q9C652\|RBP1_ARATH	1E-45	RNA-binding protein 1
trEMBL	tr\|V7BDF1\|V7BDF1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14501.1}
TAIR10	AT3G07810.1	2E-105	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	26030627	26033103	+
GWHAAZE00000002	mRNA	26030627	26033103	+
GWHAAZE00000002	exon	26030627	26030878	+
GWHAAZE00000002	exon	26031259	26031339	+
GWHAAZE00000002	exon	26031648	26031746	+
GWHAAZE00000002	exon	26031839	26033000	+
GWHAAZE00000002	exon	26033096	26033103	+
GWHAAZE00000002	CDS	26030627	26030878	+
GWHAAZE00000002	CDS	26031259	26031339	+
GWHAAZE00000002	CDS	26031648	26031746	+
GWHAAZE00000002	CDS	26031839	26033000	+
GWHAAZE00000002	CDS	26033096	26033103	+

Transcript Sequence
>GWHTAAZE006472 ATGGGATGCTTTGGAAATGGCATGTGCAGAATGGAAATGGAGCCCGGCAAGTTGTTTATTGGTGGGATTTCTTGGGACACCAATGAAGACCGGCTAAGGGAGTACTTTCAAACTTTTGGTGAAGTAGTGGAAGCTGTAATTATGAAGGATCGAACAACAGGCCGTGCCCGCGGTTTTGGCTTTGTTGTTTTTGCCGATCCCGCTGCTGCAGAGAGAGTTATCAAAGAAAAGCACACGATAGATGGTAGAACTCACACTCAATTTGATTGCAAGGATGCTTTGGAATGGGTGAGAAGAATGCTGGATTGTGCTTCTCTATTAAACGTTCTCGCAGATCTTGTAACGCATGCATTGATAATAGATGATAGGAGGAAAATTTTGATATGCCCTCCTCATGCCTTGATTCCTTTTTTGAACATTCTTAACCTCAAGGTGGAGGCCAAGAAGGCTGTTCCTAGGGATGACCAGCAAAGTCTGAACCGAAACGGTGGCAGTATTCAGGGATCACCAGGCCCTACTCGCACAAAAAAGATATTTGTTGGAGGTTTAGCATCCACAGTCACAGAGAGTGACTTTAAGAAATACTTTGATCAGTTTGGGACAATCACAGATATCGTCGTTATGTATGACCACAACACCCAAAGGCCTCGTGGTTTTGGATTCATCACCTTTGATTCAGAGGAAGCAGTCGATAGAGTGTTGCTCCGAACCTTTCATGAACTCAATGGTAAAATGGTTGAGGTCAAGCGGGCTGTTCCGAAGGAGTTATCTCCAGCTCCAAATCAGAGCCCGTTAGGTGGCTATAGCTACGGTGTGAGTAGAGCCAGTAGTTTCCTCAATGCCTACACTCAAGGATATACTCCGAGCTCAGTTGGAGGCTATGGAGTACGAGTGGATGGTAGATTTAGTCCAATTACTGTTGGTCGAAATGGGTATCTTCCCTTTAATCCATCTGGTTATGGGATGGGACCGAATTCTGAGTCAGGGTTCAGTACAAGTGGAAACTTTGGTTCAAATCTTGGCTATGGGCGTGGGTTGAACCCTTTCTATAATGCAAGTTCAAACAGGTACAGTAGCCCAGTTGGGTATGGTGGAAATGGTTCCGTTTTAAGTTCAACAAATCCGAACATGTGGGGAAATGGAAATCTTAATTATGCTGCCAACTCTGTGAACTCTAATGACTTTGTGGGATCAAGAAGTGGGAGTAATGGGTTGGCGGGTTCATTTGGAAATATCGGCACAATTTGGGGTTCCTCTCCTGTTTCTGGTCAAGGCGGAGGAAATGGTTCTGCACTTAGTAGAGGTAACATTAATTATGGAAGTGCCGAAAACGGGTTTGGGTCGAGTGGAGGAGCTTATGGACGAAACAGTGGAAGTGGTGGTGGTGGTGCTACTAATGATAGTGGTGCTTTTGGAAACATTTATGGGGGTGGTTCAGTTTATGGGGACCCAACTTGGAGGTCAGCATCTCCAGAGCTACAAGGTGGCTCTGGCTCCTTTGGTTATAGGCTTGGGACTGCAGCAACTTCAGATGTTATGCCTAAAAACTCGGTTGGTTATGTGGGTTACAGTGTTGCGAATAGATCGACTAGAGTTGCTTAA

Network for GWHGAAZE006464

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	18	81	5.40E-17
PF00076.23	RRM_1	178	235	1.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.452
	SRR3591706	second leaf	21.397
	SRR3591707	mature leaf	18.192
	SRR3591708	Shoot apex	26.739
	SRR3591709	Stem	32.750
	SRR3591710	White floral bud	47.632
	SRR3591711	White flower	29.913
	SRR3591712	Green floral bud	44.731
	SRR3591713	Yellow flower	27.817
SRP173429	SRR8316895	Juvenile bud stage	13.171
	SRR8316896	Juvenile bud stage	22.201
	SRR8316897	Juvenile bud stage	13.630
	SRR8316894	Third green stage	12.174
	SRR8316900	Third green stage	46.404
	SRR8316901	Third green stage	52.305
	SRR8316898	Complete white stage	37.839
	SRR8316899	Complete white stage	61.450
	SRR8316903	Complete white stage	53.727
	SRR8316902	Silver flowering stage	20.034
	SRR8316904	Silver flowering stage	29.731
	SRR8316905	Silver flowering stage	16.798
	SRR8316906	Gold flowering stage	37.569
	SRR8316907	Gold flowering stage	39.033
	SRR8316908	Gold flowering stage	54.844
SRP132670	SRR6706286	Control	52.153
	SRR6706287	Light intensity 50%	51.371
	SRR6706288	Light intensity 20%	53.503
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.349
	CNS0095593	Slightly white alabastrum(diploid) 2	26.562
	CNS0095594	Slightly white alabastrum(diploid) 3	24.221
	CNS0095595	Whole white alabastrum(diploid) 2	28.921
	CNS0095596	Whole white alabastrum(diploid) 3	33.530
	CNS0095597	Whole white alabastrum(diploid) 4	28.022
	CNS0095598	Silvery flower (diploied) 1	17.568
	CNS0095599	Silvery flower (diploied) 2	15.165
	CNS0095600	Silvery flower (diploied) 3	51.363
	CNS0095601	Golden flower (diploid) 1	12.301
	CNS0095602	Golden flower (diploid) 2	29.983
	CNS0095603	Golden flower (diploid) 3	29.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.298
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.150
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.428
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.322
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.178
	CNS0095610	Silvery flower (tetraploid) 1	40.730
	CNS0095611	Silvery flower (tetraploid) 2	35.497
	CNS0095612	Silvery flower (tetraploid) 3	29.320
	CNS0095613	Golden flower (tetraploid) 1	20.150
	CNS0095614	Golden flower (tetraploid) 2	35.305
	CNS0095615	Golden flower (tetraploid) 3	27.892
CRA001975	CRR073297	Stem 1	30.205
	CRR073298	Stem 2	33.922
	CRR073299	Stem 3	28.624
	CRR073300	Leaf 1	54.878
	CRR073301	Leaf 2	51.410
	CRR073302	Leaf 3	44.376
	CRR073303	Juvenile bud 1	66.052
	CRR073304	Juvenile bud 2	57.374
	CRR073305	Juvenile bud 3	73.313
	CRR073306	Third green 1	42.787
	CRR073307	Third green 2	44.874
	CRR073308	Third green 3	45.953
	CRR073309	Second white 1	25.941
	CRR073310	Second white 2	20.849
	CRR073311	Second white 3	17.846
	CRR073312	Silver flowering 1	13.004
	CRR073313	Silver flowering 2	14.300
	CRR073314	Silver flowering 3	15.708
	CRR073315	Gold flowering 1	10.946
	CRR073316	Gold flowering 2	13.875
	CRR073317	Gold flowering 3	12.534
	CRR073318	Tawny withering 1	37.891
	CRR073319	Tawny withering 2	29.125
	CRR073320	Tawny withering 3	38.963