Gene detail

Detail information of GWHGAAZE006449

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI18637.3	2.5997E-149	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9SCY5\|KINB2_ARATH	7E-140	SNF1-related protein kinase regulatory subunit beta-2
trEMBL	tr\|F6GZ00\|F6GZ00_VITVI	5E-150	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45191.1}
TAIR10	AT4G16360.3	9E-106	5'-AMP-activated protein kinase beta-2 subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25754499	25759397	+
GWHAAZE00000002	mRNA	25754499	25759397	+
GWHAAZE00000002	exon	25754499	25754624	+
GWHAAZE00000002	exon	25755726	25755904	+
GWHAAZE00000002	exon	25756009	25756171	+
GWHAAZE00000002	exon	25758439	25758758	+
GWHAAZE00000002	exon	25759334	25759397	+
GWHAAZE00000002	CDS	25754499	25754624	+
GWHAAZE00000002	CDS	25755726	25755904	+
GWHAAZE00000002	CDS	25756009	25756171	+
GWHAAZE00000002	CDS	25758439	25758758	+
GWHAAZE00000002	CDS	25759334	25759397	+

Transcript Sequence
>GWHTAAZE006457 ATGTCCGGGGCCGAGGACGGTGGTCCCCACATTACCTATCATCATCATCATCGGCATGAATTGATGGGTCAATCTCCTCCTCCTAGCCCTAGGGCTGCTGGTTCACCATTGATGTTCACTCCTCAGGTTCCAGTGGTGCCTTTGCAAAGACCTGATGAGTTGCAGATGCCAAGCCCCTCATGGATGCAAACTACATCAGGGTATGAAGACATGTGCAATGAGCAAAGAATTCCAACTATGATCACATGGAGCTATGATGGCAAGGAAGTTGCTGTTGAGGGATCATGGGATAACTGGAAAACTAGGAAGCCCTTGCAGAGATCAGGGAAAGACTTCACAATTATGAAAGTGCTGCCTTCAGGAGTATACCAGTATCGGTTTATTGTTGACGGACAGTGGAGGTATGCCCCCGACTTGCCATGGAGCCAGGATGAAGCAGGCAATGCTTACAACATCTTAGACTTGCAAGATTATGTGCCAGAAGATATTGAAAGCATATCTGGTTTTGAACCACCTCAGTCCCCGGATTCAAGCTATAACAGCTTTCAACTAGGTGCAGAGGACTTCACAAAGGAGCCACCAATTGTTCCTCCACACCTGCAAATGACCTTGCTTAATGTACCATCAGCCCACATGGAGATTCCACCTCCTTCAAGACCTCAGCATGTGGTGCTTAACCATCTCTACATGCAGAAAGGGAGGAATAGCCCTTCTGTTGTGGCACTTGGTTCTACCCACCGCTTCTTAGCCAAGTATGTGACAGTCGTACTATACAAGTCCATACAGAGTGTTCATAAATCATGTGCAGAGGGTATTCAGCCATTTAGAGGGGCAAGAGAGAAGAGAATTTAA

Network for GWHGAAZE006449

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16561.6	AMPK1_CBM	77	156	9.80E-32
PF04739.16	AMPKBI	190	259	3.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07199	PRKAB	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		AMPK signaling pathway	map04152
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.400
	SRR3591706	second leaf	21.951
	SRR3591707	mature leaf	21.197
	SRR3591708	Shoot apex	28.053
	SRR3591709	Stem	32.103
	SRR3591710	White floral bud	41.199
	SRR3591711	White flower	39.794
	SRR3591712	Green floral bud	45.639
	SRR3591713	Yellow flower	31.912
SRP173429	SRR8316895	Juvenile bud stage	20.720
	SRR8316896	Juvenile bud stage	32.496
	SRR8316897	Juvenile bud stage	14.041
	SRR8316894	Third green stage	11.890
	SRR8316900	Third green stage	36.384
	SRR8316901	Third green stage	38.003
	SRR8316898	Complete white stage	16.600
	SRR8316899	Complete white stage	35.084
	SRR8316903	Complete white stage	16.224
	SRR8316902	Silver flowering stage	12.441
	SRR8316904	Silver flowering stage	14.205
	SRR8316905	Silver flowering stage	8.135
	SRR8316906	Gold flowering stage	33.721
	SRR8316907	Gold flowering stage	32.864
	SRR8316908	Gold flowering stage	43.417
SRP132670	SRR6706286	Control	37.786
	SRR6706287	Light intensity 50%	35.318
	SRR6706288	Light intensity 20%	34.686
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.680
	CNS0095593	Slightly white alabastrum(diploid) 2	33.729
	CNS0095594	Slightly white alabastrum(diploid) 3	34.282
	CNS0095595	Whole white alabastrum(diploid) 2	33.438
	CNS0095596	Whole white alabastrum(diploid) 3	37.472
	CNS0095597	Whole white alabastrum(diploid) 4	27.833
	CNS0095598	Silvery flower (diploied) 1	17.928
	CNS0095599	Silvery flower (diploied) 2	14.938
	CNS0095600	Silvery flower (diploied) 3	22.994
	CNS0095601	Golden flower (diploid) 1	18.274
	CNS0095602	Golden flower (diploid) 2	22.133
	CNS0095603	Golden flower (diploid) 3	19.659
	CNS0095604	Slightly white alabastrum(tetraploid) 1	64.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.854
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.382
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.268
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.784
	CNS0095610	Silvery flower (tetraploid) 1	34.423
	CNS0095611	Silvery flower (tetraploid) 2	29.256
	CNS0095612	Silvery flower (tetraploid) 3	36.722
	CNS0095613	Golden flower (tetraploid) 1	28.357
	CNS0095614	Golden flower (tetraploid) 2	38.541
	CNS0095615	Golden flower (tetraploid) 3	21.953
CRA001975	CRR073297	Stem 1	36.982
	CRR073298	Stem 2	38.094
	CRR073299	Stem 3	39.679
	CRR073300	Leaf 1	42.321
	CRR073301	Leaf 2	41.745
	CRR073302	Leaf 3	32.228
	CRR073303	Juvenile bud 1	35.197
	CRR073304	Juvenile bud 2	33.136
	CRR073305	Juvenile bud 3	37.279
	CRR073306	Third green 1	44.367
	CRR073307	Third green 2	30.814
	CRR073308	Third green 3	36.531
	CRR073309	Second white 1	32.856
	CRR073310	Second white 2	23.988
	CRR073311	Second white 3	23.472
	CRR073312	Silver flowering 1	22.831
	CRR073313	Silver flowering 2	22.540
	CRR073314	Silver flowering 3	18.851
	CRR073315	Gold flowering 1	16.821
	CRR073316	Gold flowering 2	14.401
	CRR073317	Gold flowering 3	19.215
	CRR073318	Tawny withering 1	19.982
	CRR073319	Tawny withering 2	19.299
	CRR073320	Tawny withering 3	20.961