Detail information of GWHGAAZE006425


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272588.21.5487E-145PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Vitis vinifera]
Swissprottr|Q8GUN5|PHL1_ARATH8E-47Protein PHR1-LIKE 1
trEMBLtr|F6HD66|F6HD66_VITVI6E-146Putative uncharacterized protein {ECO:0000313|EMBL:CCB50161.1}
TAIR10AT2G01060.12E-55myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2544330125449784-
GWHAAZE00000002mRNA2544330125449784-
GWHAAZE00000002exon2544330125443867-
GWHAAZE00000002exon2544431925444391-
GWHAAZE00000002exon2544471825444775-
GWHAAZE00000002exon2544577225445814-
GWHAAZE00000002exon2544593025446006-
GWHAAZE00000002exon2544656225446795-
GWHAAZE00000002exon2544691425447003-
GWHAAZE00000002exon2544971925449784-
GWHAAZE00000002five_prime_UTR2544971925449784-
GWHAAZE00000002five_prime_UTR2544691425447003-
GWHAAZE00000002five_prime_UTR2544678525446795-
GWHAAZE00000002CDS2544656225446784-
GWHAAZE00000002CDS2544593025446006-
GWHAAZE00000002CDS2544577225445814-
GWHAAZE00000002CDS2544471825444775-
GWHAAZE00000002CDS2544431925444391-
GWHAAZE00000002CDS2544330125443867-
Transcript Sequence

Network for GWHGAAZE006425

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding531032.30E-08
PF14379.7Myb_CC_LHEQLE1371834.80E-23
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-G2-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.016
SRR3591706second leaf20.935
SRR3591707mature leaf19.073
SRR3591708Shoot apex37.749
SRR3591709Stem25.040
SRR3591710White floral bud26.158
SRR3591711White flower31.976
SRR3591712Green floral bud25.102
SRR3591713Yellow flower28.111
SRP173429 SRR8316895Juvenile bud stage 21.045
SRR8316896Juvenile bud stage 26.649
SRR8316897Juvenile bud stage 15.692
SRR8316894Third green stage 11.237
SRR8316900Third green stage 26.321
SRR8316901Third green stage 29.899
SRR8316898Complete white stage 13.578
SRR8316899Complete white stage 37.466
SRR8316903Complete white stage 19.398
SRR8316902Silver flowering stage12.702
SRR8316904Silver flowering stage14.914
SRR8316905Silver flowering stage8.263
SRR8316906Gold flowering stage 31.138
SRR8316907Gold flowering stage 32.525
SRR8316908Gold flowering stage 34.066
SRP132670SRR6706286Control37.789
SRR6706287Light intensity 50%37.778
SRR6706288Light intensity 20%35.439
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.948
CNS0095593Slightly white alabastrum(diploid) 224.529
CNS0095594Slightly white alabastrum(diploid) 319.109
CNS0095595Whole white alabastrum(diploid) 218.970
CNS0095596Whole white alabastrum(diploid) 315.624
CNS0095597Whole white alabastrum(diploid) 416.055
CNS0095598Silvery flower (diploied) 126.116
CNS0095599Silvery flower (diploied) 225.856
CNS0095600Silvery flower (diploied) 336.228
CNS0095601Golden flower (diploid) 127.261
CNS0095602Golden flower (diploid) 235.793
CNS0095603Golden flower (diploid) 336.104
CNS0095604Slightly white alabastrum(tetraploid) 127.076
CNS0095605Slightly white alabastrum(tetraploid) 224.463
CNS0095606Slightly white alabastrum(tetraploid) 338.194
CNS0095607Whole white alabastrum(tetraploid) 120.484
CNS0095608Whole white alabastrum(tetraploid) 213.858
CNS0095609Whole white alabastrum(tetraploid) 325.363
CNS0095610Silvery flower (tetraploid) 134.813
CNS0095611Silvery flower (tetraploid) 237.417
CNS0095612Silvery flower (tetraploid) 332.867
CNS0095613Golden flower (tetraploid) 128.490
CNS0095614Golden flower (tetraploid) 234.341
CNS0095615Golden flower (tetraploid) 340.877
CRA001975CRR073297Stem 139.340
CRR073298Stem 234.408
CRR073299Stem 338.050
CRR073300Leaf 136.177
CRR073301Leaf 235.324
CRR073302Leaf 329.128
CRR073303Juvenile bud 126.608
CRR073304Juvenile bud 224.992
CRR073305Juvenile bud 333.070
CRR073306Third green 113.195
CRR073307Third green 212.485
CRR073308Third green 315.300
CRR073309Second white 119.801
CRR073310Second white 222.131
CRR073311Second white 320.298
CRR073312Silver flowering 120.758
CRR073313Silver flowering 221.388
CRR073314Silver flowering 317.268
CRR073315Gold flowering 117.198
CRR073316Gold flowering 221.560
CRR073317Gold flowering 320.343
CRR073318Tawny withering 130.101
CRR073319Tawny withering 225.354
CRR073320Tawny withering 334.967