Detail information of GWHGAAZE006413


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008812715.12.23839E-12PREDICTED: casein kinase II subunit beta-like isoform X2 [Phoenix dactylifera]
Swissprottr|O80507|CSK2E_ARATH7E-11Putative casein kinase II subunit beta-4
trEMBLtr|A5BGR6|A5BGR6_VITVI3E-11Putative uncharacterized protein {ECO:0000313|EMBL:CAN72327.1}
TAIR10AT2G44680.20.0003casein kinase II beta subunit 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2529770925298135-
GWHAAZE00000002mRNA2529770925298135-
GWHAAZE00000002exon2529770925297720-
GWHAAZE00000002exon2529783325298135-
GWHAAZE00000002CDS2529790525298135-
GWHAAZE00000002three_prime_UTR2529783325297904-
GWHAAZE00000002three_prime_UTR2529770925297720-
Transcript Sequence

Network for GWHGAAZE006413

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03115CSNK2B Ribosome biogenesis in eukaryotes map03008
Wnt signaling pathwaymap04310
NF-kappa B signaling pathwaymap04064
Mitophagy - animalmap04137
Mitophagy - yeastmap04139
Adherens junctionmap04520
Circadian rhythm - plantmap04712

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.947
SRR3591706second leaf5.267
SRR3591707mature leaf2.626
SRR3591708Shoot apex7.137
SRR3591709Stem6.203
SRR3591710White floral bud7.926
SRR3591711White flower3.990
SRR3591712Green floral bud4.086
SRR3591713Yellow flower3.139
SRP173429 SRR8316895Juvenile bud stage 5.347
SRR8316896Juvenile bud stage 9.300
SRR8316897Juvenile bud stage 1.555
SRR8316894Third green stage 3.834
SRR8316900Third green stage 8.009
SRR8316901Third green stage 9.618
SRR8316898Complete white stage 6.433
SRR8316899Complete white stage 10.655
SRR8316903Complete white stage 8.607
SRR8316902Silver flowering stage3.984
SRR8316904Silver flowering stage8.292
SRR8316905Silver flowering stage3.069
SRR8316906Gold flowering stage 9.374
SRR8316907Gold flowering stage 9.008
SRR8316908Gold flowering stage 5.781
SRP132670SRR6706286Control6.782
SRR6706287Light intensity 50%6.950
SRR6706288Light intensity 20%7.346
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.170
CNS0095593Slightly white alabastrum(diploid) 23.720
CNS0095594Slightly white alabastrum(diploid) 35.553
CNS0095595Whole white alabastrum(diploid) 25.196
CNS0095596Whole white alabastrum(diploid) 37.136
CNS0095597Whole white alabastrum(diploid) 48.776
CNS0095598Silvery flower (diploied) 15.373
CNS0095599Silvery flower (diploied) 25.889
CNS0095600Silvery flower (diploied) 310.187
CNS0095601Golden flower (diploid) 13.560
CNS0095602Golden flower (diploid) 28.278
CNS0095603Golden flower (diploid) 38.606
CNS0095604Slightly white alabastrum(tetraploid) 16.016
CNS0095605Slightly white alabastrum(tetraploid) 23.984
CNS0095606Slightly white alabastrum(tetraploid) 38.164
CNS0095607Whole white alabastrum(tetraploid) 12.331
CNS0095608Whole white alabastrum(tetraploid) 25.841
CNS0095609Whole white alabastrum(tetraploid) 34.723
CNS0095610Silvery flower (tetraploid) 19.168
CNS0095611Silvery flower (tetraploid) 23.542
CNS0095612Silvery flower (tetraploid) 33.246
CNS0095613Golden flower (tetraploid) 12.700
CNS0095614Golden flower (tetraploid) 23.954
CNS0095615Golden flower (tetraploid) 34.507
CRA001975CRR073297Stem 17.333
CRR073298Stem 28.450
CRR073299Stem 310.265
CRR073300Leaf 112.020
CRR073301Leaf 28.397
CRR073302Leaf 36.537
CRR073303Juvenile bud 15.889
CRR073304Juvenile bud 26.747
CRR073305Juvenile bud 36.758
CRR073306Third green 18.743
CRR073307Third green 28.127
CRR073308Third green 38.499
CRR073309Second white 13.911
CRR073310Second white 25.445
CRR073311Second white 33.485
CRR073312Silver flowering 13.459
CRR073313Silver flowering 22.480
CRR073314Silver flowering 33.344
CRR073315Gold flowering 11.855
CRR073316Gold flowering 22.733
CRR073317Gold flowering 32.798
CRR073318Tawny withering 17.283
CRR073319Tawny withering 25.303
CRR073320Tawny withering 36.298