Gene detail

Detail information of GWHGAAZE006407

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP45986.1	hypothetical protein JCGZ_11889 [Jatropha curcas]
Swissprot	tr\|O23553\|BAM3_ARATH	Beta-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|A0A067LBX2\|A0A067LBX2_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP45986.1}
TAIR10	AT4G17090.1	chloroplast beta-amylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25204033	25206327	+
GWHAAZE00000002	mRNA	25204033	25206327	+
GWHAAZE00000002	exon	25204033	25204547	+
GWHAAZE00000002	exon	25204768	25204978	+
GWHAAZE00000002	exon	25205259	25205369	+
GWHAAZE00000002	exon	25205536	25206327	+
GWHAAZE00000002	CDS	25204033	25204547	+
GWHAAZE00000002	CDS	25204768	25204978	+
GWHAAZE00000002	CDS	25205259	25205369	+
GWHAAZE00000002	CDS	25205536	25206327	+

Transcript Sequence
>GWHTAAZE006415 ATGGCTTTAGCACTTCGTTCTTCGAGGTCATTTAACTCATTAGTCAATCTAAAAGAAATCAAAAGTTCAAAATCTTTCAATGACTTCTCGAACAAGGCTTGTTTTGCGCAAAGGAAGCCATCAAGCCGTATCCGAATAAAAAGTTCAATGCAAGAAGATCAATTCTCACCTTCGGAAAGACGTAAAAAAGAGCAGCTTCATGGTCTTTCTCTCTCTCAGAGCATAAATGATACAAGAGTGCATGTCTTTGTGATGCTGCCACTTGACACAATCTCATTTGCCGGAAAGCTGAACAAGCCAAGAGCGATGAACGCCAGTTTGATGGCCTTGAAAATTGCAGGAGTAGAAGGCGTAATGATCGATGCTTGGTGGGGTTTGGTTGAGAAAGATGGGCCCTTTAAGTATAAATGGGAGGGCTATGCAGAGCTTGTGAAGATGGTTCAAAAGCATGGATTGAAGCTCCAAGTTGTTATGTCTTTTCATCAATGTGGCGGAAATGTTCTAGACTCCTGCAGTATTCCTCTACCCCAATGGACACTTGAAGAAATCAGCAAGAACCCTGACCTTGTCTACACAGACAAATCAGGGCGTAGGAACCCCGAGTACATCTCCTTAGGTTGTGACTCACTACCAGTGCTTAGAGGACGAACACCTATCCAGGTCTACTCTGACTACATGAGGAGCTTTCGAGAAAGATTCGCAGATTACTTGGGGAATGTTATAGTGGAGATTCAAGTGGGTATGGGCCCTTGTGGAGAGCTGAGATATCCATCCTATCCAGAAAGCAGTGGAACTTGGAGCTTTCCCGGTATTGGAGAATTCCAATGCTATGATAAGTATATGATGGCTTCACTGGAAGCATCGGCAGAGGCAGCCGGAATGAAAGAATGGGGCCGAAGTGGACCCCACAACTCCGGGCAGTATCACCAATTTCCGGAAGAAACTGGATTCTTCCAAAGGGAAGGAACATGGAACACTAAGTATGGCCAATTCTTCCTCGAATGGTATTCCAACAAGCTACTAGAGCACGGCGAAAATATACTAGCGACTGCAGAAGGAATATTCCGAGGAAGAGGAACTAAAATATCTGGAAAGGTAGCCGGAATCCATTGGCAATACAGAACAAAATCCCACGCAGCCGAGCTCACAGCTGGATATTACAATACTTTCCATCGAGACGGGTATTTACCAATAGCAAGAATGTTCAGTAAACACGGAGTTGTATTCAACTTCACTTGCATGGAAATGAGAGATAGAGAACAACCGGAGAATGCAAATTCCTCGCCGGAACAATTAGTACGCCAAGTCAAAATGGTGACTAAAACAGCCGGAACGGCACTCGCTGGAGAAAATGCTGTCGAGAGGTACGATGCTAGTGCATTTGCACAAGTTTTGGAAACAAATAAATCGGATTGTGGTAATGCGTTGAGCGAATTTACGTATTTGAGAATGAATAAACGGTTGTTTGAAGGTGAAAATTGGAGGCAGTTGGTGGAATTTGTGAGGAACATGTTGGAAGGTGAGAAGGGTACGAGAATTCCGGAGAATGACTCGAGCAGGACATACCTTTACGTTCGTTTTATCAAAGAGCAGAGACGGAAAATATTTGAGGAAGCTGCTGGCGTTTAA

Network for GWHGAAZE006407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	83	500	1.20E-161

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.084
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.181
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.053
	SRR8316896	Juvenile bud stage	0.352
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.066
	SRR8316900	Third green stage	0.383
	SRR8316901	Third green stage	0.391
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.089
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.147
	SRR6706287	Light intensity 50%	0.356
	SRR6706288	Light intensity 20%	0.439
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.108
	CNS0095593	Slightly white alabastrum(diploid) 2	0.601
	CNS0095594	Slightly white alabastrum(diploid) 3	0.240
	CNS0095595	Whole white alabastrum(diploid) 2	0.066
	CNS0095596	Whole white alabastrum(diploid) 3	0.268
	CNS0095597	Whole white alabastrum(diploid) 4	0.122
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.044
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.016
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.001
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.329
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.181
	CRR073298	Stem 2	0.640
	CRR073299	Stem 3	0.207
	CRR073300	Leaf 1	1.186
	CRR073301	Leaf 2	1.528
	CRR073302	Leaf 3	0.808
	CRR073303	Juvenile bud 1	0.344
	CRR073304	Juvenile bud 2	0.034
	CRR073305	Juvenile bud 3	0.149
	CRR073306	Third green 1	0.234
	CRR073307	Third green 2	0.038
	CRR073308	Third green 3	0.039
	CRR073309	Second white 1	0.334
	CRR073310	Second white 2	0.465
	CRR073311	Second white 3	0.083
	CRR073312	Silver flowering 1	0.125
	CRR073313	Silver flowering 2	0.023
	CRR073314	Silver flowering 3	0.262
	CRR073315	Gold flowering 1	0.011
	CRR073316	Gold flowering 2	0.287
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.031
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000