Gene detail

Detail information of GWHGAAZE006406

Functional Annotation

Database	Orthologs	Annotation
Nr	AFO84076.1	beta-amylase [Actinidia chinensis]
Swissprot	tr\|O23553\|BAM3_ARATH	Beta-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|S4SKD9\|S4SKD9_ACTCH	Beta-amylase {ECO:0000313\|EMBL:AFO84076.1}
TAIR10	AT4G17090.1	chloroplast beta-amylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	25185033	25187644	+
GWHAAZE00000002	mRNA	25185033	25187644	+
GWHAAZE00000002	exon	25185033	25185562	+
GWHAAZE00000002	exon	25185926	25186136	+
GWHAAZE00000002	exon	25186563	25186673	+
GWHAAZE00000002	exon	25186857	25187200	+
GWHAAZE00000002	exon	25187275	25187644	+
GWHAAZE00000002	CDS	25185033	25185562	+
GWHAAZE00000002	CDS	25185926	25186136	+
GWHAAZE00000002	CDS	25186563	25186673	+
GWHAAZE00000002	CDS	25186857	25187200	+
GWHAAZE00000002	CDS	25187275	25187644	+

Transcript Sequence
>GWHTAAZE006414 ATGGCCTTAACACTTCGTTCTTCCACTTCATTTATCAATCTAAAAGAAATCAAGAGTTCAAAACCTCTCAATGACTTCTCTAGCACGGTTTGTTTTGCACAAATCAAGCCAAAATATCGTCTCAAAGTAATGAGTTCGATGCAACAAGCTCAACTCTCGAGTGAGAAAATCTTGCCTTTAGAAGGAGGTAAATCCGAGCAAAACGAGAAGTTTCAAGGAGTATCACTTTCTCATAGCAAAACTGATCCAATGGTGCCGGTATTCGTGATGCTACCACTTGACACGGTCTCAATGGGGGGACACTTGAACAAACCGCGAGCAATGAATGCTAGTTTGATGGCCTTGAAAAGTGCGGGAGTGGAAGGCGTAATGGTCGATGCATGGTGGGGGTTGGTAGAGAAAGAAGGGCCTTTGAAGTATAATTGGGAGGGATATGTGGAACTTGTGAAGATGGTTGAAAAGCATGGATTGAAGATCCAAGTTGTTATGTCTTTTCACCAGTGTGGTGGAAATGTTGGAGACTCTTGCAGCATCCCTCTACCCCCATGGGCACTAGAAGAAATCAGCAAGAACCCTGATCTTGTCTACACAGATAGATCAGGGCGGAGGAACCCCGAGTACATCTCCTTAGGATGTGACTCGTTGCCCGTACTTAGAGGAAGAACACCCATTCAGGTCTACTCTGACTACATGAGGAGCTTCCAACAAAGATTCCAGGATTACTTGGGGAATGTCATTGTGGAAATTCAAGTGGGGATGGGACCTTGTGGGGAGCTGAGATATCCATCCTATCCAGAAAGCAATGGAACATGGAACTTTCCGGGCATTGGAGAATTCCAATGCTACGATAAGTATATGAGGGCTTCACTGGAAGCATCAGCAGAGGCAGCAGGGAAGAAAGACTGGGGACGAAGTGGACCCCACGACTCTGGCAAGTACAACCAATTCCCTGACGATACTGGATTCTTCCGCAAGGAAGGAACCTGGAACACAGAGTACGGCCAATTCTTCCTAGGATGGTATTCGGCCAAGCTAATAACGCATGGTGAAAGTATATTAGCTGCTGCCGAAGGAATATTCCAAGGAACTGGAGCTAAATTATCTGGAAAAGTAGCTGGAATCCATTGGCACTATGGAACAAGATCCCACGCAGCCGAGCTCACAGCTGGATACTACAATACCAGAACTCAAGACGGAGAACAGCCAGATTATGCGAATTGTTCACCAGAAGGGTTAGTTCGGCAAGTCAAAATGGCCACTAAATTGGCTGGAACATTACTTGCAGGAGAAAATGCGCTGGAGAGGTATGATGCAGGGGCATTTGCACAAGTATTGGCAACAAGTAGGTCCGATTCTGGTAATGCGTTGTGCGCGTTTACGTATTTGAGAATGAATAAGCGGTTATTTGAAGGAGAAAATTGGAGGCAGTTGGTGGAATTTGTGAGGAGTATGTTGGAAGGTGGAAGGGACACAAGAAATTCAGAGATTGATTCCACCAAGAGGGACCTTTATGTTCATTTTATTGTAGAGGAGAGTGTGAAGGCTAAGGAAGCTGCTCTTGTTTAA

Network for GWHGAAZE006406

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	88	393	2.10E-128
PF01373.18	Glyco_hydro_14	397	480	4.00E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.361
	SRR3591706	second leaf	32.643
	SRR3591707	mature leaf	83.344
	SRR3591708	Shoot apex	10.069
	SRR3591709	Stem	10.458
	SRR3591710	White floral bud	4.180
	SRR3591711	White flower	4.392
	SRR3591712	Green floral bud	14.633
	SRR3591713	Yellow flower	0.291
SRP173429	SRR8316895	Juvenile bud stage	4.489
	SRR8316896	Juvenile bud stage	3.663
	SRR8316897	Juvenile bud stage	5.986
	SRR8316894	Third green stage	4.230
	SRR8316900	Third green stage	12.458
	SRR8316901	Third green stage	12.934
	SRR8316898	Complete white stage	0.693
	SRR8316899	Complete white stage	42.274
	SRR8316903	Complete white stage	1.965
	SRR8316902	Silver flowering stage	0.357
	SRR8316904	Silver flowering stage	0.267
	SRR8316905	Silver flowering stage	0.116
	SRR8316906	Gold flowering stage	0.234
	SRR8316907	Gold flowering stage	0.562
	SRR8316908	Gold flowering stage	2.030
SRP132670	SRR6706286	Control	8.905
	SRR6706287	Light intensity 50%	5.768
	SRR6706288	Light intensity 20%	6.067
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.404
	CNS0095593	Slightly white alabastrum(diploid) 2	5.286
	CNS0095594	Slightly white alabastrum(diploid) 3	5.448
	CNS0095595	Whole white alabastrum(diploid) 2	7.034
	CNS0095596	Whole white alabastrum(diploid) 3	3.166
	CNS0095597	Whole white alabastrum(diploid) 4	10.560
	CNS0095598	Silvery flower (diploied) 1	7.577
	CNS0095599	Silvery flower (diploied) 2	0.766
	CNS0095600	Silvery flower (diploied) 3	0.513
	CNS0095601	Golden flower (diploid) 1	0.684
	CNS0095602	Golden flower (diploid) 2	0.658
	CNS0095603	Golden flower (diploid) 3	0.511
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.262
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.740
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.937
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.566
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.479
	CNS0095610	Silvery flower (tetraploid) 1	3.759
	CNS0095611	Silvery flower (tetraploid) 2	1.365
	CNS0095612	Silvery flower (tetraploid) 3	0.667
	CNS0095613	Golden flower (tetraploid) 1	0.796
	CNS0095614	Golden flower (tetraploid) 2	2.281
	CNS0095615	Golden flower (tetraploid) 3	0.216
CRA001975	CRR073297	Stem 1	2.822
	CRR073298	Stem 2	5.397
	CRR073299	Stem 3	2.840
	CRR073300	Leaf 1	16.334
	CRR073301	Leaf 2	18.042
	CRR073302	Leaf 3	6.393
	CRR073303	Juvenile bud 1	9.983
	CRR073304	Juvenile bud 2	5.543
	CRR073305	Juvenile bud 3	16.353
	CRR073306	Third green 1	0.090
	CRR073307	Third green 2	0.342
	CRR073308	Third green 3	0.408
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.457
	CRR073311	Second white 3	0.236
	CRR073312	Silver flowering 1	0.272
	CRR073313	Silver flowering 2	0.079
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	38.754
	CRR073316	Gold flowering 2	59.498
	CRR073317	Gold flowering 3	30.235
	CRR073318	Tawny withering 1	7.367
	CRR073319	Tawny withering 2	4.435
	CRR073320	Tawny withering 3	4.446