Gene detail

Detail information of GWHGAAZE006354

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097444.1	1.7506E-177	PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Sesamum indicum]
Swissprot	tr\|Q93XM7\|MCAT_ARATH	4E-165	Mitochondrial carnitine/acylcarnitine carrier-like protein
trEMBL	tr\|A0A067KDN2\|A0A067KDN2_JATCU	2E-175	Uncharacterized protein {ECO:0000313\|EMBL:KDP34326.1}
TAIR10	AT5G46800.1	2E-131	Mitochondrial substrate carrier family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	24049571	24051089	-
GWHAAZE00000002	mRNA	24049571	24051089	-
GWHAAZE00000002	exon	24049571	24050066	-
GWHAAZE00000002	exon	24050584	24050773	-
GWHAAZE00000002	exon	24050888	24051089	-
GWHAAZE00000002	CDS	24050888	24051089	-
GWHAAZE00000002	CDS	24050584	24050773	-
GWHAAZE00000002	CDS	24049571	24050066	-

Transcript Sequence
>GWHTAAZE006362 ATGGGAGACGTAGCCAAGGACCTAACTTCAGGTACCGCGGGAGGGGCAGCCCAGTTGATATGCGGGCACCCTTTCGATACCATCAAGGTAAAGCTCCAAAGCCAGCCTGCTTCACTACCTGGCCAGCTTCCCAAATACTCTGGTGCAATGGATGCTGTCAAACAAACAGTATCATCTGAAGGCGCAAAGGGTCTCTATAAAGGTATGGGCGCCCCACTTGCCACTGTGGCAGCCTTGAATGCCGTACTCTTCACTGCAAGGGGACAAATGGAGGCATTGCTGAGGTCGCAACCCGGGGTCCCACTTACGGTGAGCCAGCAGGTTGTTTGTGGGGCGGGGGCTGGACTCGCAGTCTCCATTCCAGCCTGCCCAACAGAATTGATCAAATGCAGATTACAAGCAGAGAGTACAACTGATGCTGGCTCGGCCCCTGCTGCAGCAAAGTACAAAGGGCCAACAGATGTCGCTAGGCACGTACTCCGGTCAAGGGGCATAAGGGGCCTCTTTAAGGGCTTGGGTCCCACCATGGCTCGGGAAGTACCGGGAAATGCAGCCATGTTTGGTGTCTACGAGGCCCTAAAACAGTACCTTGCAGGCGGCCGAGACACTTCAAGCCTAGGGAGAGGCTCACTTATTGTATCCGGAGGGTTAGCCGGAGCTTCATTTTGGGTTCTTGTCTACCCAACCGACGTTGTGAAGAGTGTAATTCAAGTCGATGATTTTAAGAACCCCAAGTTTTCGGGCTCGATGGATGCTTTTAGAAAGATACTGGGCTCCGAGGGAGTGAAAGGATTGTACAAGGGATTTGGGCCTGCTATGGCTCGTAGCATACCGGCAAACGCGGCTTGTTTTTTGGCTTACGAGGTGATGAGATCTAGTCTGGGTTAA

Network for GWHGAAZE006354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00153.28	Mito_carr	4	95	3.70E-17
PF00153.28	Mito_carr	102	198	2.00E-21
PF00153.28	Mito_carr	212	293	1.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15109	SLC25A20_29, CACT, CACL, CRC1	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006839	biological_process	mitochondrial transport
GO:0031966	cellular_component	mitochondrial membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.967
	SRR3591706	second leaf	16.593
	SRR3591707	mature leaf	17.891
	SRR3591708	Shoot apex	21.710
	SRR3591709	Stem	24.229
	SRR3591710	White floral bud	11.056
	SRR3591711	White flower	11.839
	SRR3591712	Green floral bud	19.766
	SRR3591713	Yellow flower	11.939
SRP173429	SRR8316895	Juvenile bud stage	15.359
	SRR8316896	Juvenile bud stage	25.101
	SRR8316897	Juvenile bud stage	9.743
	SRR8316894	Third green stage	8.969
	SRR8316900	Third green stage	27.519
	SRR8316901	Third green stage	32.005
	SRR8316898	Complete white stage	10.380
	SRR8316899	Complete white stage	37.502
	SRR8316903	Complete white stage	16.445
	SRR8316902	Silver flowering stage	9.646
	SRR8316904	Silver flowering stage	7.522
	SRR8316905	Silver flowering stage	5.573
	SRR8316906	Gold flowering stage	16.044
	SRR8316907	Gold flowering stage	18.754
	SRR8316908	Gold flowering stage	11.579
SRP132670	SRR6706286	Control	25.508
	SRR6706287	Light intensity 50%	25.564
	SRR6706288	Light intensity 20%	30.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.914
	CNS0095593	Slightly white alabastrum(diploid) 2	24.205
	CNS0095594	Slightly white alabastrum(diploid) 3	20.490
	CNS0095595	Whole white alabastrum(diploid) 2	17.523
	CNS0095596	Whole white alabastrum(diploid) 3	24.446
	CNS0095597	Whole white alabastrum(diploid) 4	19.269
	CNS0095598	Silvery flower (diploied) 1	26.863
	CNS0095599	Silvery flower (diploied) 2	21.115
	CNS0095600	Silvery flower (diploied) 3	9.750
	CNS0095601	Golden flower (diploid) 1	20.223
	CNS0095602	Golden flower (diploid) 2	11.758
	CNS0095603	Golden flower (diploid) 3	10.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.154
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.561
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.825
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.280
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.127
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.167
	CNS0095610	Silvery flower (tetraploid) 1	17.712
	CNS0095611	Silvery flower (tetraploid) 2	11.921
	CNS0095612	Silvery flower (tetraploid) 3	12.217
	CNS0095613	Golden flower (tetraploid) 1	17.728
	CNS0095614	Golden flower (tetraploid) 2	22.146
	CNS0095615	Golden flower (tetraploid) 3	13.706
CRA001975	CRR073297	Stem 1	18.468
	CRR073298	Stem 2	19.123
	CRR073299	Stem 3	8.646
	CRR073300	Leaf 1	33.973
	CRR073301	Leaf 2	29.190
	CRR073302	Leaf 3	12.404
	CRR073303	Juvenile bud 1	12.384
	CRR073304	Juvenile bud 2	5.547
	CRR073305	Juvenile bud 3	8.713
	CRR073306	Third green 1	1.865
	CRR073307	Third green 2	0.889
	CRR073308	Third green 3	1.841
	CRR073309	Second white 1	1.915
	CRR073310	Second white 2	2.091
	CRR073311	Second white 3	2.412
	CRR073312	Silver flowering 1	1.371
	CRR073313	Silver flowering 2	3.051
	CRR073314	Silver flowering 3	2.400
	CRR073315	Gold flowering 1	5.805
	CRR073316	Gold flowering 2	9.956
	CRR073317	Gold flowering 3	5.143
	CRR073318	Tawny withering 1	14.627
	CRR073319	Tawny withering 2	13.895
	CRR073320	Tawny withering 3	10.401