Gene detail

Detail information of GWHGAAZE006352

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280253.1	0	PREDICTED: transcription factor MYC2-like [Vitis vinifera]
Swissprot	tr\|Q39204\|MYC2_ARATH	0	Transcription factor MYC2
trEMBL	tr\|F6HT90\|F6HT90_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57900.1}
TAIR10	AT1G32640.1	5E-164	Basic helix-loop-helix (bHLH) DNA-binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23953223	23955157	+
GWHAAZE00000002	mRNA	23953223	23955157	+
GWHAAZE00000002	exon	23953223	23954198	+
GWHAAZE00000002	exon	23954235	23954367	+
GWHAAZE00000002	exon	23954413	23954852	+
GWHAAZE00000002	exon	23954910	23955157	+
GWHAAZE00000002	CDS	23953223	23954198	+
GWHAAZE00000002	CDS	23954235	23954367	+
GWHAAZE00000002	CDS	23954413	23954852	+
GWHAAZE00000002	CDS	23954910	23955157	+

Transcript Sequence
>GWHTAAZE006360 ATGTCCTCCGATTTGACGTCGTTTTGGCCCCCACCGCCATCAGCCTCCTCCGCTTCCACACCTACTCAATTTCCCCCCAGACCCCCGCCTCAATCCCAACCCTCCCTTTTCAATCAGGATAGCCTCCAGCACCGCCTCCAGGCCCTAATCGAAGGCGCAAGTGAGAGCTGGACCTACGCCATCTTCTGGCAATCCTCCAACGGAGATTATTCAACTCCGTCCTTATTAGGGTGGGGCGACGGTTACTACAAAGGAGAAGAGAACAAAGGCAAGAGAAAAAATGTAATTACTTCTGCCGCCGAGCAGGAACACCGGAAAAAGGTGCTCCGGGAGCTCAACTCCCTCATCTCGGGTTCTCACGCATCCCCGGATGATGCTGTGGATGAGGAGGTTACAGATACGGAGTGGTTTTTCTTAGTTTCGATGACACAATCTTTTGCTAATGGAATTGGTCTCCCGGGCCAGGCTTTTCTTACTTCAAATTCGGTTTGGGTCGCTGGACCCGAGAGGCTTGCGGGATCTCCATGCGAGAGAGCCCGACAAGCTCAAGGGTTCGGATTACAGACGATTGTTTGTATACCGTCTGCAACTGGAGTTGTTGAACTGGGTTCCTCTGACGTGATTTATCAGAGTTCAGATCTGATGAATAAAGTTAGGGTTCTTTTCAATTTTAGTGGTGGTGAAATGGGTTCGATGTCTGTTCCGGCCGAGAGTGATCCGTCGGCGCTCTGGCTGACGGATCCGGTTACTTCGGGTGCCGGAATTAAGGATTCTGATGATGCGCCGGCGATTGGTGACCGTCAGAATCATCAATTGTCTAAGCAAATTGTGTTCGAAAACCATAGCTCCAGTACTGTGACTGAAGCTCCTAATGCTTCAATTCTCGTTCAGAATCGAAATCAGAATCATCTTCCTCATCAAGAACTTGGATTCTTCACGAGGGAATTGAATTTCTCCGAATTTGGGTACGAAGGAAGCAAACCCGAATCAGGGGAAATTTTGAATTTTGGTGAGAGCAAGAGAAGTGCTTGTAGTGGAAATGGAAATCTATTTTCCACCCAATCTCAATTCATTCCCACGGAGGAAAACAAGAAGAAGAGATCCCCGGGTGTGATTCCGGCAAAGTCCTCTAATGGAGTCGGTGATTCCGAGCACTCGGACCTTGAGGCCTCGGTGGTCCGGGAGGCCGAAAGCAGCAGGGCGGTGGAGCAAGAAAAAAGGCCTCGGAAAAGGGGCCGAAAACCTGCTAATGGCCGAGAAGAGCCATTGAACCACGTCGAAGCGGAGAGACAGAGGAGGGAGAAACTGAACCAGCGATTCTACGCACTTCGAGCCGTTGTACCGAATGTCTCGAAAATGGATAAAGCTTCATTGTTGGGGGATGCTATTTCCTATATAAACGAGCTCAAATCGAAGATTCAGGCCTCGGATTCCAAAAAAGACGATTTACATCAGCAAGTTGAGTCGTTGAAGAAGAAATTTGCAAATTCTGCTAATTCAGCGACAAGCGAGCATAATGTCACGGGTTTAGACAGATCTAGACTTACTGATGTGGATATAGATGTGAAGATTATTGGTTGGGACGCGATGATCCGGGTCCAGTCTAATAAAAAGAACCACCCAGCCGCGAGGCTAATGGGCACTCTAATGGAGCTGGATTTAGACGTGCACCATGCCAGTGTTTCAGTGGTTAATGAGATTATGATTCAACAAGCGACTGTGAAAATGGGCAGCCGGTATTATACACAAGAGCAGCTCAGGGTTGCGCTGTCTTCGAGAATCGCTGCGACGCGATGA

Network for GWHGAAZE006352

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.7	bHLH-MYC_N	42	222	1.20E-52
PF00010.27	HLH	424	469	1.20E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
K13422	MYC2	MAPK signaling pathway - plant	map04016
K13422	MYC2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	148.408
	SRR3591706	second leaf	64.891
	SRR3591707	mature leaf	75.868
	SRR3591708	Shoot apex	107.769
	SRR3591709	Stem	186.373
	SRR3591710	White floral bud	68.277
	SRR3591711	White flower	112.290
	SRR3591712	Green floral bud	24.903
	SRR3591713	Yellow flower	47.325
SRP173429	SRR8316895	Juvenile bud stage	163.873
	SRR8316896	Juvenile bud stage	74.634
	SRR8316897	Juvenile bud stage	100.539
	SRR8316894	Third green stage	21.148
	SRR8316900	Third green stage	27.507
	SRR8316901	Third green stage	54.348
	SRR8316898	Complete white stage	1.286
	SRR8316899	Complete white stage	115.738
	SRR8316903	Complete white stage	3.220
	SRR8316902	Silver flowering stage	3.662
	SRR8316904	Silver flowering stage	4.464
	SRR8316905	Silver flowering stage	3.367
	SRR8316906	Gold flowering stage	14.632
	SRR8316907	Gold flowering stage	11.708
	SRR8316908	Gold flowering stage	14.032
SRP132670	SRR6706286	Control	9.139
	SRR6706287	Light intensity 50%	11.868
	SRR6706288	Light intensity 20%	10.122
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.845
	CNS0095593	Slightly white alabastrum(diploid) 2	56.005
	CNS0095594	Slightly white alabastrum(diploid) 3	51.306
	CNS0095595	Whole white alabastrum(diploid) 2	41.989
	CNS0095596	Whole white alabastrum(diploid) 3	7.993
	CNS0095597	Whole white alabastrum(diploid) 4	32.760
	CNS0095598	Silvery flower (diploied) 1	167.176
	CNS0095599	Silvery flower (diploied) 2	210.950
	CNS0095600	Silvery flower (diploied) 3	90.392
	CNS0095601	Golden flower (diploid) 1	240.525
	CNS0095602	Golden flower (diploid) 2	193.359
	CNS0095603	Golden flower (diploid) 3	183.639
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.272
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.002
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.443
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.500
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.393
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.227
	CNS0095610	Silvery flower (tetraploid) 1	25.281
	CNS0095611	Silvery flower (tetraploid) 2	13.262
	CNS0095612	Silvery flower (tetraploid) 3	16.893
	CNS0095613	Golden flower (tetraploid) 1	15.450
	CNS0095614	Golden flower (tetraploid) 2	25.337
	CNS0095615	Golden flower (tetraploid) 3	28.207
CRA001975	CRR073297	Stem 1	39.815
	CRR073298	Stem 2	53.516
	CRR073299	Stem 3	75.143
	CRR073300	Leaf 1	77.835
	CRR073301	Leaf 2	101.317
	CRR073302	Leaf 3	60.173
	CRR073303	Juvenile bud 1	64.049
	CRR073304	Juvenile bud 2	75.147
	CRR073305	Juvenile bud 3	191.614
	CRR073306	Third green 1	6.902
	CRR073307	Third green 2	8.933
	CRR073308	Third green 3	12.815
	CRR073309	Second white 1	7.638
	CRR073310	Second white 2	5.997
	CRR073311	Second white 3	9.065
	CRR073312	Silver flowering 1	27.390
	CRR073313	Silver flowering 2	31.587
	CRR073314	Silver flowering 3	22.883
	CRR073315	Gold flowering 1	77.979
	CRR073316	Gold flowering 2	140.567
	CRR073317	Gold flowering 3	240.247
	CRR073318	Tawny withering 1	85.389
	CRR073319	Tawny withering 2	192.152
	CRR073320	Tawny withering 3	142.676