Detail information of GWHGAAZE006351


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002527677.11.2385E-145arf gtpase-activating protein, putative [Ricinus communis]
Swissprottr|Q8H100|AGD8_ARATH9E-104Probable ADP-ribosylation factor GTPase-activating protein AGD8
trEMBLtr|B9SNV8|B9SNV8_RICCO5E-146Arf gtpase-activating protein, putative {ECO:0000313|EMBL:EEF34748.1}
TAIR10AT4G17890.18E-71ARF-GAP domain 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2391294423919449-
GWHAAZE00000002mRNA2391294423919449-
GWHAAZE00000002exon2391294423913051-
GWHAAZE00000002exon2391454223914667-
GWHAAZE00000002exon2391552523915788-
GWHAAZE00000002exon2391684323917278-
GWHAAZE00000002exon2391940723919449-
GWHAAZE00000002five_prime_UTR2391940723919449-
GWHAAZE00000002five_prime_UTR2391723923917278-
GWHAAZE00000002CDS2391684323917238-
GWHAAZE00000002CDS2391552523915788-
GWHAAZE00000002CDS2391454223914667-
GWHAAZE00000002CDS2391294423913051-
Transcript Sequence

Network for GWHGAAZE006351

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12493ARFGAP2_3 Endocytosis map04144

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf82.103
SRR3591706second leaf50.301
SRR3591707mature leaf52.939
SRR3591708Shoot apex53.053
SRR3591709Stem80.359
SRR3591710White floral bud63.693
SRR3591711White flower74.725
SRR3591712Green floral bud55.482
SRR3591713Yellow flower64.852
SRP173429 SRR8316895Juvenile bud stage 48.977
SRR8316896Juvenile bud stage 67.268
SRR8316897Juvenile bud stage 35.998
SRR8316894Third green stage 19.500
SRR8316900Third green stage 55.858
SRR8316901Third green stage 58.292
SRR8316898Complete white stage 28.294
SRR8316899Complete white stage 67.967
SRR8316903Complete white stage 36.732
SRR8316902Silver flowering stage35.054
SRR8316904Silver flowering stage37.669
SRR8316905Silver flowering stage16.120
SRR8316906Gold flowering stage 56.371
SRR8316907Gold flowering stage 64.850
SRR8316908Gold flowering stage 60.002
SRP132670SRR6706286Control58.175
SRR6706287Light intensity 50%53.966
SRR6706288Light intensity 20%55.866
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.413
CNS0095593Slightly white alabastrum(diploid) 243.114
CNS0095594Slightly white alabastrum(diploid) 347.414
CNS0095595Whole white alabastrum(diploid) 248.102
CNS0095596Whole white alabastrum(diploid) 344.246
CNS0095597Whole white alabastrum(diploid) 444.292
CNS0095598Silvery flower (diploied) 144.975
CNS0095599Silvery flower (diploied) 267.557
CNS0095600Silvery flower (diploied) 387.752
CNS0095601Golden flower (diploid) 163.010
CNS0095602Golden flower (diploid) 295.688
CNS0095603Golden flower (diploid) 399.170
CNS0095604Slightly white alabastrum(tetraploid) 148.023
CNS0095605Slightly white alabastrum(tetraploid) 246.916
CNS0095606Slightly white alabastrum(tetraploid) 363.421
CNS0095607Whole white alabastrum(tetraploid) 146.983
CNS0095608Whole white alabastrum(tetraploid) 242.914
CNS0095609Whole white alabastrum(tetraploid) 365.219
CNS0095610Silvery flower (tetraploid) 178.259
CNS0095611Silvery flower (tetraploid) 273.043
CNS0095612Silvery flower (tetraploid) 380.011
CNS0095613Golden flower (tetraploid) 159.978
CNS0095614Golden flower (tetraploid) 279.289
CNS0095615Golden flower (tetraploid) 385.796
CRA001975CRR073297Stem 167.429
CRR073298Stem 262.913
CRR073299Stem 376.654
CRR073300Leaf 169.813
CRR073301Leaf 270.450
CRR073302Leaf 362.063
CRR073303Juvenile bud 173.513
CRR073304Juvenile bud 265.656
CRR073305Juvenile bud 363.416
CRR073306Third green 176.043
CRR073307Third green 266.125
CRR073308Third green 371.460
CRR073309Second white 147.216
CRR073310Second white 253.330
CRR073311Second white 348.487
CRR073312Silver flowering 167.301
CRR073313Silver flowering 262.054
CRR073314Silver flowering 366.685
CRR073315Gold flowering 160.074
CRR073316Gold flowering 277.756
CRR073317Gold flowering 345.098
CRR073318Tawny withering 1115.174
CRR073319Tawny withering 2113.238
CRR073320Tawny withering 3119.963