Detail information of GWHGAAZE006349


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010104299.12.2825E-173putative ADP-ribosylation factor GTPase-activating protein AGD9 [Morus notabilis]
Swissprottr|Q8H100|AGD8_ARATH2E-133Probable ADP-ribosylation factor GTPase-activating protein AGD8
trEMBLtr|W9RN38|W9RN38_9ROSA9E-174Putative ADP-ribosylation factor GTPase-activating protein AGD9 {ECO:0000313|EMBL:EXB99719.1}
TAIR10AT4G17890.17E-109ARF-GAP domain 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2384253123851396-
GWHAAZE00000002mRNA2384253123851396-
GWHAAZE00000002exon2385135423851396-
GWHAAZE00000002exon2384697323847408-
GWHAAZE00000002exon2384595723846220-
GWHAAZE00000002exon2384536023845485-
GWHAAZE00000002exon2384352723843628-
GWHAAZE00000002exon2384253123842638-
GWHAAZE00000002five_prime_UTR2385135423851396-
GWHAAZE00000002five_prime_UTR2384736623847408-
GWHAAZE00000002CDS2384697323847365-
GWHAAZE00000002CDS2384595723846220-
GWHAAZE00000002CDS2384536023845485-
GWHAAZE00000002CDS2384352723843628-
GWHAAZE00000002CDS2384253123842638-
Transcript Sequence

Network for GWHGAAZE006349

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12493ARFGAP2_3 Endocytosis map04144

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.473
SRR3591706second leaf25.683
SRR3591707mature leaf20.487
SRR3591708Shoot apex53.330
SRR3591709Stem44.007
SRR3591710White floral bud102.038
SRR3591711White flower59.189
SRR3591712Green floral bud90.771
SRR3591713Yellow flower48.967
SRP173429 SRR8316895Juvenile bud stage 27.267
SRR8316896Juvenile bud stage 43.497
SRR8316897Juvenile bud stage 20.392
SRR8316894Third green stage 17.175
SRR8316900Third green stage 64.012
SRR8316901Third green stage 57.679
SRR8316898Complete white stage 27.935
SRR8316899Complete white stage 54.184
SRR8316903Complete white stage 31.137
SRR8316902Silver flowering stage26.314
SRR8316904Silver flowering stage29.965
SRR8316905Silver flowering stage13.916
SRR8316906Gold flowering stage 41.954
SRR8316907Gold flowering stage 42.757
SRR8316908Gold flowering stage 50.807
SRP132670SRR6706286Control60.299
SRR6706287Light intensity 50%58.439
SRR6706288Light intensity 20%59.860
CNP0000432CNS0095592Slightly white alabastrum(diploid) 145.449
CNS0095593Slightly white alabastrum(diploid) 243.902
CNS0095594Slightly white alabastrum(diploid) 345.998
CNS0095595Whole white alabastrum(diploid) 294.656
CNS0095596Whole white alabastrum(diploid) 3101.792
CNS0095597Whole white alabastrum(diploid) 4117.500
CNS0095598Silvery flower (diploied) 125.758
CNS0095599Silvery flower (diploied) 228.666
CNS0095600Silvery flower (diploied) 354.118
CNS0095601Golden flower (diploid) 122.535
CNS0095602Golden flower (diploid) 246.377
CNS0095603Golden flower (diploid) 341.103
CNS0095604Slightly white alabastrum(tetraploid) 184.777
CNS0095605Slightly white alabastrum(tetraploid) 280.414
CNS0095606Slightly white alabastrum(tetraploid) 350.866
CNS0095607Whole white alabastrum(tetraploid) 1116.216
CNS0095608Whole white alabastrum(tetraploid) 2122.867
CNS0095609Whole white alabastrum(tetraploid) 390.961
CNS0095610Silvery flower (tetraploid) 157.117
CNS0095611Silvery flower (tetraploid) 253.949
CNS0095612Silvery flower (tetraploid) 362.187
CNS0095613Golden flower (tetraploid) 135.914
CNS0095614Golden flower (tetraploid) 249.899
CNS0095615Golden flower (tetraploid) 353.277
CRA001975CRR073297Stem 163.059
CRR073298Stem 256.927
CRR073299Stem 365.821
CRR073300Leaf 185.304
CRR073301Leaf 273.976
CRR073302Leaf 363.886
CRR073303Juvenile bud 188.299
CRR073304Juvenile bud 275.549
CRR073305Juvenile bud 361.466
CRR073306Third green 172.248
CRR073307Third green 272.106
CRR073308Third green 370.737
CRR073309Second white 156.094
CRR073310Second white 255.737
CRR073311Second white 355.000
CRR073312Silver flowering 171.609
CRR073313Silver flowering 283.420
CRR073314Silver flowering 358.820
CRR073315Gold flowering 148.363
CRR073316Gold flowering 235.398
CRR073317Gold flowering 346.155
CRR073318Tawny withering 189.457
CRR073319Tawny withering 262.112
CRR073320Tawny withering 389.467