Gene detail

Detail information of GWHGAAZE006342

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010096556.1	1.8505E-175	Zinc finger CCCH domain-containing protein 56 [Morus notabilis]
Swissprot	tr\|Q84UQ3\|C3H56_ORYSJ	2E-128	Zinc finger CCCH domain-containing protein 56
trEMBL	tr\|W9R214\|W9R214_9ROSA	7E-176	Zinc finger CCCH domain-containing protein 56 {ECO:0000313\|EMBL:EXB64915.1}
TAIR10	AT1G32360.1	2E-102	Zinc finger (CCCH-type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23660332	23662641	+
GWHAAZE00000002	mRNA	23660332	23662641	+
GWHAAZE00000002	exon	23660332	23661163	+
GWHAAZE00000002	exon	23662364	23662641	+
GWHAAZE00000002	CDS	23660332	23661163	+
GWHAAZE00000002	CDS	23662364	23662641	+

Transcript Sequence
>GWHTAAZE006350 ATGGATTACCGTCGAGATTTAGGGTTTTCGAGTGGAAATGTTGTTCAAATAATCCCAGGAAATGGACCGGAAAATTGGGGTTCAGGGTCAGACCAAGCTGTTTGGGCAACCGAGGATGATTATGGTGATTGGAATAGGGAGACTTCAATTGATACAACTTCTAATTCGAATTATGAAACAAGATCCGGTAGCGAACCCCCTAACAAAAAATCAAGAAATGCACAAGATTTGCCCTCATCAAATAATCGTTCCAAAGCGATAGGCAAAATGTTCTTCAAGACTAAATTGTGTTGCAAGTTCCGAGCGGGGACCTGCCCATACATCACTAATTGCAACTTTGCTCATAGCATCGAAGAGCTTCGAAGACCTCCCCCAAACTGGCAAGAAATAGTGGCAGCCCATGAGGACGAGCGGGGCCCTTCTTCAGAGCCGAGGGAGGAGTTCCAAATCCCCTCACTCGATTCTTCGAGCTTTGCGGTGGAGACCCCGAGGTCCTATAAAGGGCGCCACTGCAAGAAGTTTTATACCGAGGAGGGTTGCCCGTACGGGGATAATTGCACTTTTCTTCATGATGAGCAGTCTAGGTCGAGAGAGAGTGTAGCGATAAGTCTGGGGCCTGGTTCGGGTGGTGGGTATGGGAGTGGGAGTGGGAGTGGTGGTGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAGGAAGTGGTGGCGGTGGCGCCGGAAGTGGTGCATCAACCTTGAAGCCTTCGAACTGGAAAACTAGGATATGTAACAAGTGGGAGCAGACGGGTTATTGCCCGTTTGGAAACAAGTGTCATTTCGCTCATGGGGCTGCAGAACTTCATCGTTATGGCGGGGGCCTAATGGAAACGGACGCTCGAGAGTTATCCTCCTCATTCGACCCGAAACATGGGGCGGTTCCTTCAAAACCTCTAACCGACACCATAGTTACGTCAGCGGGTTCAATTCCCCATTCGGATCTTTATCATATGGGAGTTCCATCACAGAGGCTTTCAAATGCAATACAGAGGACTGGGCAGAGACCCCATCAAAAATGGAAGGGACCCGACAAAATCAGTCTAATATACGGTGACTGGATTGAAGATCTGGAGTAG

Network for GWHGAAZE006342

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	92	116	2.10E-05
PF18044.2	zf-CCCH_4	169	191	6.20E-08
PF00642.25	zf-CCCH	250	275	3.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.840
	SRR3591706	second leaf	14.097
	SRR3591707	mature leaf	19.807
	SRR3591708	Shoot apex	22.709
	SRR3591709	Stem	21.890
	SRR3591710	White floral bud	29.648
	SRR3591711	White flower	38.839
	SRR3591712	Green floral bud	26.270
	SRR3591713	Yellow flower	28.212
SRP173429	SRR8316895	Juvenile bud stage	13.090
	SRR8316896	Juvenile bud stage	18.683
	SRR8316897	Juvenile bud stage	8.251
	SRR8316894	Third green stage	4.775
	SRR8316900	Third green stage	18.841
	SRR8316901	Third green stage	19.510
	SRR8316898	Complete white stage	9.925
	SRR8316899	Complete white stage	33.482
	SRR8316903	Complete white stage	18.665
	SRR8316902	Silver flowering stage	10.811
	SRR8316904	Silver flowering stage	12.474
	SRR8316905	Silver flowering stage	6.880
	SRR8316906	Gold flowering stage	23.526
	SRR8316907	Gold flowering stage	22.173
	SRR8316908	Gold flowering stage	26.896
SRP132670	SRR6706286	Control	19.937
	SRR6706287	Light intensity 50%	19.604
	SRR6706288	Light intensity 20%	19.743
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.426
	CNS0095593	Slightly white alabastrum(diploid) 2	18.206
	CNS0095594	Slightly white alabastrum(diploid) 3	16.169
	CNS0095595	Whole white alabastrum(diploid) 2	15.683
	CNS0095596	Whole white alabastrum(diploid) 3	15.429
	CNS0095597	Whole white alabastrum(diploid) 4	13.409
	CNS0095598	Silvery flower (diploied) 1	28.502
	CNS0095599	Silvery flower (diploied) 2	23.754
	CNS0095600	Silvery flower (diploied) 3	26.243
	CNS0095601	Golden flower (diploid) 1	31.434
	CNS0095602	Golden flower (diploid) 2	27.104
	CNS0095603	Golden flower (diploid) 3	30.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.786
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.893
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.979
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.397
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.918
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.989
	CNS0095610	Silvery flower (tetraploid) 1	31.227
	CNS0095611	Silvery flower (tetraploid) 2	25.776
	CNS0095612	Silvery flower (tetraploid) 3	29.020
	CNS0095613	Golden flower (tetraploid) 1	28.850
	CNS0095614	Golden flower (tetraploid) 2	38.792
	CNS0095615	Golden flower (tetraploid) 3	32.255
CRA001975	CRR073297	Stem 1	15.652
	CRR073298	Stem 2	13.395
	CRR073299	Stem 3	14.789
	CRR073300	Leaf 1	14.419
	CRR073301	Leaf 2	13.320
	CRR073302	Leaf 3	9.041
	CRR073303	Juvenile bud 1	9.651
	CRR073304	Juvenile bud 2	10.864
	CRR073305	Juvenile bud 3	14.798
	CRR073306	Third green 1	7.939
	CRR073307	Third green 2	6.399
	CRR073308	Third green 3	6.545
	CRR073309	Second white 1	10.024
	CRR073310	Second white 2	10.821
	CRR073311	Second white 3	9.170
	CRR073312	Silver flowering 1	10.347
	CRR073313	Silver flowering 2	9.203
	CRR073314	Silver flowering 3	10.613
	CRR073315	Gold flowering 1	10.794
	CRR073316	Gold flowering 2	12.908
	CRR073317	Gold flowering 3	7.727
	CRR073318	Tawny withering 1	17.977
	CRR073319	Tawny withering 2	18.115
	CRR073320	Tawny withering 3	17.873