Detail information of GWHGAAZE006338


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13052.10unnamed protein product [Coffea canephora]
Swissprottr|Q8LPK2|AB2B_ARATH0ABC transporter B family member 2 (Precursor)
trEMBLtr|A0A068UXM2|A0A068UXM2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313|EMBL:CDP13052.1}
TAIR10AT4G25960.10P-glycoprotein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2354569823559341-
GWHAAZE00000002mRNA2354569823559341-
GWHAAZE00000002exon2354569823546248-
GWHAAZE00000002exon2354706023547472-
GWHAAZE00000002exon2354856223548809-
GWHAAZE00000002exon2354890423549145-
GWHAAZE00000002exon2354989323550308-
GWHAAZE00000002exon2355083223551211-
GWHAAZE00000002exon2355283423553374-
GWHAAZE00000002exon2355400923554268-
GWHAAZE00000002exon2355494123555141-
GWHAAZE00000002exon2355818723558362-
GWHAAZE00000002exon2355866223558716-
GWHAAZE00000002exon2355906523559341-
GWHAAZE00000002five_prime_UTR2355933823559341-
GWHAAZE00000002CDS2355906523559337-
GWHAAZE00000002CDS2355866223558716-
GWHAAZE00000002CDS2355818723558362-
GWHAAZE00000002CDS2355494123555141-
GWHAAZE00000002CDS2355400923554268-
GWHAAZE00000002CDS2355283423553374-
GWHAAZE00000002CDS2355083223551211-
GWHAAZE00000002CDS2354989323550308-
GWHAAZE00000002CDS2354890423549145-
GWHAAZE00000002CDS2354856223548809-
GWHAAZE00000002CDS2354706023547472-
GWHAAZE00000002CDS2354569823546248-
Transcript Sequence

Network for GWHGAAZE006338

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.24ABC_membrane483192.90E-48
PF00005.28ABC_tran3905383.40E-34
PF00664.24ABC_membrane6899591.40E-49
PF00005.28ABC_tran102511738.80E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05658ABCB1, CD243 ABC transporters map02010
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport
GO:0016021cellular_componentintegral component of membrane
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0042626molecular_functionATPase-coupled transmembrane transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.885
SRR3591706second leaf28.509
SRR3591707mature leaf8.910
SRR3591708Shoot apex15.614
SRR3591709Stem4.470
SRR3591710White floral bud7.667
SRR3591711White flower4.504
SRR3591712Green floral bud11.788
SRR3591713Yellow flower1.352
SRP173429 SRR8316895Juvenile bud stage 12.415
SRR8316896Juvenile bud stage 18.924
SRR8316897Juvenile bud stage 5.846
SRR8316894Third green stage 8.845
SRR8316900Third green stage 25.552
SRR8316901Third green stage 23.368
SRR8316898Complete white stage 10.725
SRR8316899Complete white stage 46.604
SRR8316903Complete white stage 16.655
SRR8316902Silver flowering stage2.364
SRR8316904Silver flowering stage4.277
SRR8316905Silver flowering stage1.999
SRR8316906Gold flowering stage 3.158
SRR8316907Gold flowering stage 3.114
SRR8316908Gold flowering stage 6.709
SRP132670SRR6706286Control30.026
SRR6706287Light intensity 50%31.483
SRR6706288Light intensity 20%33.143
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.255
CNS0095593Slightly white alabastrum(diploid) 27.260
CNS0095594Slightly white alabastrum(diploid) 36.234
CNS0095595Whole white alabastrum(diploid) 24.796
CNS0095596Whole white alabastrum(diploid) 33.056
CNS0095597Whole white alabastrum(diploid) 44.233
CNS0095598Silvery flower (diploied) 113.470
CNS0095599Silvery flower (diploied) 27.497
CNS0095600Silvery flower (diploied) 311.662
CNS0095601Golden flower (diploid) 16.830
CNS0095602Golden flower (diploid) 212.684
CNS0095603Golden flower (diploid) 312.646
CNS0095604Slightly white alabastrum(tetraploid) 15.216
CNS0095605Slightly white alabastrum(tetraploid) 23.562
CNS0095606Slightly white alabastrum(tetraploid) 322.297
CNS0095607Whole white alabastrum(tetraploid) 13.211
CNS0095608Whole white alabastrum(tetraploid) 23.090
CNS0095609Whole white alabastrum(tetraploid) 313.399
CNS0095610Silvery flower (tetraploid) 16.353
CNS0095611Silvery flower (tetraploid) 26.909
CNS0095612Silvery flower (tetraploid) 34.031
CNS0095613Golden flower (tetraploid) 13.358
CNS0095614Golden flower (tetraploid) 24.512
CNS0095615Golden flower (tetraploid) 33.991
CRA001975CRR073297Stem 129.261
CRR073298Stem 228.976
CRR073299Stem 320.911
CRR073300Leaf 142.230
CRR073301Leaf 238.965
CRR073302Leaf 323.912
CRR073303Juvenile bud 137.715
CRR073304Juvenile bud 220.316
CRR073305Juvenile bud 352.675
CRR073306Third green 15.264
CRR073307Third green 25.144
CRR073308Third green 37.752
CRR073309Second white 11.559
CRR073310Second white 22.327
CRR073311Second white 32.461
CRR073312Silver flowering 10.926
CRR073313Silver flowering 21.538
CRR073314Silver flowering 31.286
CRR073315Gold flowering 127.759
CRR073316Gold flowering 228.966
CRR073317Gold flowering 326.634
CRR073318Tawny withering 18.302
CRR073319Tawny withering 28.929
CRR073320Tawny withering 36.863