Detail information of GWHGAAZE006326


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277673.10PREDICTED: homeobox-leucine zipper protein ROC3 [Vitis vinifera]
Swissprottr|A2ZAI7|ROC3_ORYSI0Homeobox-leucine zipper protein ROC3
trEMBLtr|A5AJ70|A5AJ70_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN60291.1}
TAIR10AT5G46880.10homeobox-7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2328968523297321-
GWHAAZE00000002mRNA2328968523297321-
GWHAAZE00000002exon2328968523290167-
GWHAAZE00000002exon2329093723290965-
GWHAAZE00000002exon2329163823291910-
GWHAAZE00000002exon2329248623292654-
GWHAAZE00000002exon2329279723293030-
GWHAAZE00000002exon2329330023293401-
GWHAAZE00000002exon2329389823294359-
GWHAAZE00000002exon2329448423294684-
GWHAAZE00000002exon2329615723296274-
GWHAAZE00000002exon2329643823296610-
GWHAAZE00000002exon2329718123297321-
GWHAAZE00000002CDS2329718123297321-
GWHAAZE00000002CDS2329643823296610-
GWHAAZE00000002CDS2329615723296274-
GWHAAZE00000002CDS2329448423294684-
GWHAAZE00000002CDS2329389823294359-
GWHAAZE00000002CDS2329330023293401-
GWHAAZE00000002CDS2329279723293030-
GWHAAZE00000002CDS2329248623292654-
GWHAAZE00000002CDS2329163823291910-
GWHAAZE00000002CDS2329093723290965-
GWHAAZE00000002CDS2328968523290167-
Transcript Sequence

Network for GWHGAAZE006326

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00046.30Homeodomain891443.10E-18
PF01852.20START2905202.50E-37
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-HD-ZIP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding
GO:0008289molecular_functionlipid binding
GO:0043565molecular_functionsequence-specific DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.292
SRR3591706second leaf8.525
SRR3591707mature leaf0.606
SRR3591708Shoot apex24.807
SRR3591709Stem0.421
SRR3591710White floral bud7.238
SRR3591711White flower6.536
SRR3591712Green floral bud7.972
SRR3591713Yellow flower2.927
SRP173429 SRR8316895Juvenile bud stage 15.122
SRR8316896Juvenile bud stage 17.386
SRR8316897Juvenile bud stage 7.919
SRR8316894Third green stage 5.812
SRR8316900Third green stage 8.602
SRR8316901Third green stage 8.513
SRR8316898Complete white stage 0.656
SRR8316899Complete white stage 9.115
SRR8316903Complete white stage 2.185
SRR8316902Silver flowering stage0.447
SRR8316904Silver flowering stage0.256
SRR8316905Silver flowering stage0.321
SRR8316906Gold flowering stage 1.158
SRR8316907Gold flowering stage 0.569
SRR8316908Gold flowering stage 1.132
SRP132670SRR6706286Control11.450
SRR6706287Light intensity 50%12.223
SRR6706288Light intensity 20%12.618
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.592
CNS0095593Slightly white alabastrum(diploid) 22.364
CNS0095594Slightly white alabastrum(diploid) 32.350
CNS0095595Whole white alabastrum(diploid) 21.447
CNS0095596Whole white alabastrum(diploid) 30.482
CNS0095597Whole white alabastrum(diploid) 41.532
CNS0095598Silvery flower (diploied) 18.467
CNS0095599Silvery flower (diploied) 24.945
CNS0095600Silvery flower (diploied) 32.397
CNS0095601Golden flower (diploid) 13.814
CNS0095602Golden flower (diploid) 23.011
CNS0095603Golden flower (diploid) 33.960
CNS0095604Slightly white alabastrum(tetraploid) 113.084
CNS0095605Slightly white alabastrum(tetraploid) 27.965
CNS0095606Slightly white alabastrum(tetraploid) 342.706
CNS0095607Whole white alabastrum(tetraploid) 15.090
CNS0095608Whole white alabastrum(tetraploid) 20.268
CNS0095609Whole white alabastrum(tetraploid) 317.449
CNS0095610Silvery flower (tetraploid) 14.531
CNS0095611Silvery flower (tetraploid) 27.135
CNS0095612Silvery flower (tetraploid) 34.957
CNS0095613Golden flower (tetraploid) 13.552
CNS0095614Golden flower (tetraploid) 23.834
CNS0095615Golden flower (tetraploid) 34.891
CRA001975CRR073297Stem 130.512
CRR073298Stem 225.046
CRR073299Stem 320.631
CRR073300Leaf 121.017
CRR073301Leaf 216.818
CRR073302Leaf 315.860
CRR073303Juvenile bud 18.279
CRR073304Juvenile bud 26.286
CRR073305Juvenile bud 37.751
CRR073306Third green 11.432
CRR073307Third green 20.713
CRR073308Third green 31.316
CRR073309Second white 11.072
CRR073310Second white 20.743
CRR073311Second white 31.622
CRR073312Silver flowering 11.420
CRR073313Silver flowering 21.305
CRR073314Silver flowering 31.243
CRR073315Gold flowering 11.816
CRR073316Gold flowering 22.579
CRR073317Gold flowering 31.315
CRR073318Tawny withering 10.017
CRR073319Tawny withering 20.092
CRR073320Tawny withering 30.010