Gene detail

Detail information of GWHGAAZE006315

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276101.1	0	PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q42713\|PLSB_CARTI	6E-178	Glycerol-3-phosphate acyltransferase, chloroplastic (Precursor)
trEMBL	tr\|D7TTQ8\|D7TTQ8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33823.3}
TAIR10	AT1G32200.2	4E-138	phospholipid/glycerol acyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	23076382	23094728	-
GWHAAZE00000002	mRNA	23076382	23094728	-
GWHAAZE00000002	exon	23094425	23094728	-
GWHAAZE00000002	exon	23086157	23086254	-
GWHAAZE00000002	exon	23084955	23085041	-
GWHAAZE00000002	exon	23084718	23084815	-
GWHAAZE00000002	exon	23080871	23080928	-
GWHAAZE00000002	exon	23080026	23080127	-
GWHAAZE00000002	exon	23079873	23079934	-
GWHAAZE00000002	exon	23079651	23079705	-
GWHAAZE00000002	exon	23078796	23078915	-
GWHAAZE00000002	exon	23077227	23077346	-
GWHAAZE00000002	exon	23077018	23077131	-
GWHAAZE00000002	exon	23076382	23076597	-
GWHAAZE00000002	CDS	23094425	23094728	-
GWHAAZE00000002	CDS	23086157	23086254	-
GWHAAZE00000002	CDS	23084955	23085041	-
GWHAAZE00000002	CDS	23084718	23084815	-
GWHAAZE00000002	CDS	23080871	23080928	-
GWHAAZE00000002	CDS	23080026	23080127	-
GWHAAZE00000002	CDS	23079873	23079934	-
GWHAAZE00000002	CDS	23079651	23079705	-
GWHAAZE00000002	CDS	23078796	23078915	-
GWHAAZE00000002	CDS	23077227	23077346	-
GWHAAZE00000002	CDS	23077018	23077131	-
GWHAAZE00000002	CDS	23076382	23076597	-

Transcript Sequence
>GWHTAAZE006323 ATGTTGATCCTTTCTACTCCAGCCTCCAGAGTATTATTCGTCAACGTAAATCCTAGGGTTTCATCTTCGTCTTCGTCTTCGTATTCTTCGAAACTAGCTTTGGTTACTCCTTCTTCGGTTCTCTCTGTTCGATCCAGCACTCGGAGGTGTCCTTTTCTGGTGCTTTGCTCCTCCAACTCCAGAGGAATGGCTGAAATAGTGGAGGATAAAAAATCCAAGGTTGTTGTGCCTGATTCTAGTTCCGCTTCCGACCAGAACGAGCTCGGAATCTCACCTACATTTCTCGACGCGCGTACTGGAGAAGATTTACTTTCTGGAATTCGAAAAGAAACAGAAGCTGGAGTGCTGCCTTTAAATGTTGCCTGTGGGATGGAGGAATTGTATCATAATTATCGAAATGCGGTTCTTCAGAGTGGAAATCCCAAAGCAGAGGAGATTGTTTTATCTAACATGGCTATCGCATTAGATCGCATTTTCATGGTTGTGAAGGATCCTTTTGAGTTCTCTCCATATCACAAGGCTATTCGAGAACCTTTTGACTACTACATGTTTGTTCAAAACTATATCCGTCCTTTGATTGATTTCAGGAATTCATATGTTGGCAATATCTCCATTTTTTACGAAATAGAAGAGAAGCTTCAGCAGGGTGAAAACATTATTTTTATCTCCAACCATCAGTCTGAAGCAGATCCAGCTGTTATTGCATTGCTGCTTGAAGCAACAAATCCACATATTGCTGAGAACGTGAACTATGTGGCAGGAGATAGAGTTGTGACCGATCCTCTTTGCAAGCCCTTTAGCATGGGAAGAGATGAAAAAGAGATCAAATACGAGAAGTTTAAAGGAGATGGCTTTGCTTTTGCGCTTTACTACGATTTAAATGTGTTTAACTTGTGTGAATCCAGGGGTGGATCAAAAATAATATGGATTGCACCCAGTGGTGGAAGGGATCGCCCAGACCCTGTCACAGAACAATGGCATCCGGCACCATTTGATGCTTCTGCAGTGGACAATATGAGAAGGCTTACAGAACATGCTGGTGTTCCTGGTCATATCTATCCTTTAGCCATACTGTGCCATGACATTATGCCCCCTCCACCCCAGGTTGAAAAAGACATAGGAGAGAAAAGAGTGATCTCCTTTCATGGGACTGGAATATCAGTGGCACCTAAAATCAATTTCCGTGAAATTGTTGATGCTTGTCCAGATTTAGAAGAGCCCAAGAAAAACTCTATAGCTAAAATTATTGTTAATTGGGAATGCACCATCTATTTGGTTTCAAGAATGAGTTTATTGCAGGCTAAGGTGGCATATACACAAGCACTGTATGAGTCGGTAAGCGAGCAATACGAGGTGCTAAAATCAGCAATCCATGGCAAACAAGGCCTAAAGGCATCAACACCTACTGTCTCACTCTCACAACCGTGGCAGTAG

Network for GWHGAAZE006315

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14829.7	GPAT_N	92	166	1.30E-33
PF01553.22	Acyltransferase	207	357	1.70E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00630	ATS1	Metabolic pathways	map01100
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0006650	biological_process	glycerophospholipid metabolic process
GO:0004366	molecular_function	glycerol-3-phosphate O-acyltransferase activity
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.640
	SRR3591706	second leaf	76.089
	SRR3591707	mature leaf	89.958
	SRR3591708	Shoot apex	64.843
	SRR3591709	Stem	33.966
	SRR3591710	White floral bud	36.689
	SRR3591711	White flower	49.819
	SRR3591712	Green floral bud	25.461
	SRR3591713	Yellow flower	52.206
SRP173429	SRR8316895	Juvenile bud stage	25.059
	SRR8316896	Juvenile bud stage	30.155
	SRR8316897	Juvenile bud stage	12.789
	SRR8316894	Third green stage	13.182
	SRR8316900	Third green stage	32.614
	SRR8316901	Third green stage	29.511
	SRR8316898	Complete white stage	14.822
	SRR8316899	Complete white stage	33.141
	SRR8316903	Complete white stage	22.306
	SRR8316902	Silver flowering stage	13.633
	SRR8316904	Silver flowering stage	20.602
	SRR8316905	Silver flowering stage	9.078
	SRR8316906	Gold flowering stage	32.576
	SRR8316907	Gold flowering stage	25.981
	SRR8316908	Gold flowering stage	43.611
SRP132670	SRR6706286	Control	27.759
	SRR6706287	Light intensity 50%	25.736
	SRR6706288	Light intensity 20%	28.309
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.078
	CNS0095593	Slightly white alabastrum(diploid) 2	9.782
	CNS0095594	Slightly white alabastrum(diploid) 3	10.012
	CNS0095595	Whole white alabastrum(diploid) 2	10.382
	CNS0095596	Whole white alabastrum(diploid) 3	9.011
	CNS0095597	Whole white alabastrum(diploid) 4	9.380
	CNS0095598	Silvery flower (diploied) 1	34.768
	CNS0095599	Silvery flower (diploied) 2	25.514
	CNS0095600	Silvery flower (diploied) 3	35.836
	CNS0095601	Golden flower (diploid) 1	37.480
	CNS0095602	Golden flower (diploid) 2	41.610
	CNS0095603	Golden flower (diploid) 3	40.587
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.644
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.484
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.213
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.871
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.212
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.704
	CNS0095610	Silvery flower (tetraploid) 1	36.547
	CNS0095611	Silvery flower (tetraploid) 2	41.377
	CNS0095612	Silvery flower (tetraploid) 3	20.181
	CNS0095613	Golden flower (tetraploid) 1	24.894
	CNS0095614	Golden flower (tetraploid) 2	35.969
	CNS0095615	Golden flower (tetraploid) 3	54.481
CRA001975	CRR073297	Stem 1	41.398
	CRR073298	Stem 2	39.807
	CRR073299	Stem 3	32.685
	CRR073300	Leaf 1	25.802
	CRR073301	Leaf 2	23.200
	CRR073302	Leaf 3	19.434
	CRR073303	Juvenile bud 1	18.250
	CRR073304	Juvenile bud 2	13.704
	CRR073305	Juvenile bud 3	22.408
	CRR073306	Third green 1	5.552
	CRR073307	Third green 2	4.302
	CRR073308	Third green 3	5.299
	CRR073309	Second white 1	9.164
	CRR073310	Second white 2	11.267
	CRR073311	Second white 3	8.969
	CRR073312	Silver flowering 1	9.082
	CRR073313	Silver flowering 2	11.874
	CRR073314	Silver flowering 3	5.759
	CRR073315	Gold flowering 1	52.053
	CRR073316	Gold flowering 2	74.218
	CRR073317	Gold flowering 3	51.272
	CRR073318	Tawny withering 1	13.617
	CRR073319	Tawny withering 2	12.578
	CRR073320	Tawny withering 3	12.417