Gene detail

Detail information of GWHGAAZE006296

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009793878.1	0	PREDICTED: probable serine/threonine-protein kinase cdc7 [Nicotiana sylvestris]
Swissprot	tr\|Q40518\|MSK1_TOBAC	4E-11	Shaggy-related protein kinase NtK-1
trEMBL	tr\|M1CHF2\|M1CHF2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400067513}
TAIR10	AT4G16970.1	6E-174	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	22775363	22783022	+
GWHAAZE00000002	mRNA	22775363	22783022	+
GWHAAZE00000002	exon	22775363	22775807	+
GWHAAZE00000002	exon	22775890	22775951	+
GWHAAZE00000002	exon	22776789	22777760	+
GWHAAZE00000002	exon	22777889	22777955	+
GWHAAZE00000002	exon	22778059	22778121	+
GWHAAZE00000002	exon	22778652	22778715	+
GWHAAZE00000002	exon	22778969	22779062	+
GWHAAZE00000002	exon	22779172	22779255	+
GWHAAZE00000002	exon	22779355	22779444	+
GWHAAZE00000002	exon	22779551	22779578	+
GWHAAZE00000002	exon	22780273	22780797	+
GWHAAZE00000002	exon	22781160	22781221	+
GWHAAZE00000002	exon	22781410	22781519	+
GWHAAZE00000002	exon	22781759	22781846	+
GWHAAZE00000002	exon	22782723	22783022	+
GWHAAZE00000002	CDS	22775363	22775807	+
GWHAAZE00000002	CDS	22775890	22775951	+
GWHAAZE00000002	CDS	22776789	22777760	+
GWHAAZE00000002	CDS	22777889	22777955	+
GWHAAZE00000002	CDS	22778059	22778121	+
GWHAAZE00000002	CDS	22778652	22778715	+
GWHAAZE00000002	CDS	22778969	22779062	+
GWHAAZE00000002	CDS	22779172	22779255	+
GWHAAZE00000002	CDS	22779355	22779444	+
GWHAAZE00000002	CDS	22779551	22779578	+
GWHAAZE00000002	CDS	22780273	22780797	+
GWHAAZE00000002	CDS	22781160	22781221	+
GWHAAZE00000002	CDS	22781410	22781519	+
GWHAAZE00000002	CDS	22781759	22781846	+
GWHAAZE00000002	CDS	22782723	22783022	+

Transcript Sequence
>GWHTAAZE006304 ATGGAAGCTGAGCTCGTAACCTTAGAAGAACACTGTACTGAGTTGAGTACAGTGACCAACACCGATTTACAGAAAGCTTGGCACCTACTAGGGCTTCTACTCACAATCGGCCGTCCTGTTCGTATAATAGAGCTCGCATCCCGATGCACCTTGTTCCGAGCGCCACCGGAGTTTGTCAAATACCTTTGTTCGCTCCCTAATTCCCCTCTTAAAATGACGGGAGATCTATTTGTTACGCTTTCATCGGTTGCAATTTTGGCTTTTGGAAAGTTTGTAGTGAATTCAAACACAGTCACGCCGTTTGTGTCAGGGCTTGGAGGTTTCAGGCATAAGAGAGTATGGGAGGATGTTGAGAGAACGTATTATAGGAAGAGGAGAAAACTGAGATCCGAGTTTGATGATTTTCCGGTGGTGAAAAAGAGTGTATTTTCGCAGAATGTGAAGGAAGAGGAAGCCAATCAAAGCGCGTTAGCACTGCCTTACGAGATTGAAGATGCTTGCGCTAAGGTACCTATCTCTATAGATATGAGCAGGAGTATGATTACACAAACAGGTCACACTTGGATCATGGCAGTTAACTCTGAGAATCCAAATCAAGCGATGGTTACAACTTCCATGCATATCAATAGGAATGTTGGTCCCTCAACTTATGAGCTAGATGATGCTGAACATGGAAGTCAACGGCAGACATATATGTCTGTGAACAGGAAAGAACTTGGATGTGTATATACGTCAGAAGGCCAATATAGCTTTCTCAATTTTGAAAGACTTCCGCATGTTCCAGAAGCAATAACAGTAGAAAGGACAATGGTGTTCGTGCCTCATCCAGAATTGTCTATTCAAACCTGTACGATGGAAAATCCAGTAGTGCTGAGAGAAGCTAACATGGACGACCTTTATTCAACAAGCAGAATATTCAATGCAACATCTTGCCAAGTAGACAAACGGAAGATAATTTCACCGGTGGAGGCTGAGAATGTTGTTTATGATTGTAAAGATACTGCCAAATCGGGTGATGATGAAAGAATTGTGGATGGAAGAGAAGAGGAACAGTTAAGCGGTTCTGGTAGACATAAAGTAGATGCGGAAAATCTGCAAACTAATACTGCTAATGCGAACGTGTCTCATGAAGATGACTTGAGAGCAAAAATTACTGTGAAGGGTATTGCCACAGTATCTTCTCCAGACGGAAAGAAAACAACAGCATATTTAGAGAGTGAGGCTATTCTTTCAGCAGATCTACTCTCTGTTGAACACAAGCAACTAACAAAATCCTTATCAAATATCAAGACCATTCAGAAGGGCACACTAAATCCAATAGAGAATATTACTGTTGCAGCTCATATAGAGCAACAGCATAAAAAGTCAATATCCATGAAACAGATGTTAACGCAGAATAATGATAAGAAGATACTTGCTAAAGAGAAAAAAAGGACCTCTAAAGAAAACAGGGAAAGGACTACCTCCATTTCAGTCAAAAACCAGCCGGAGCCAAAAGTACTACCAACCTTTGAATCATTTGTTGTAAAGGAGGAAGAAGGTTCTGGTGGTTATGGCATAGTTTACAAAGCACAGAGAAATAATGATGGGGCAACATTTGCTATTAAATCTCCTCATGCAAATGCTAATAGACACCATGTTTACAATGAAATGAAAATGCTGGAGAGATTCGGGGGTAAGAACTTTGTGATAAAATATGAAGGCTCTTTCAAGAGTGGAGGTTCTGATTGCCTTGTTTTAGAGCATGTTGAGCATGATAGACCTGAGATCTTGAAGAGAGAAATAGATGTTTTTCAACTCCAGTGGTATGGATATTGTTTGTTCAGAGCCCTTGCTGGTCTACATAAGCAGGGAGTAGTTCATAGGGATGTTAAGCCCGGTAACTTCCTTTTCTCTCGTAAGACCAATAAAGGTTATCTCATAGATTTCAACCTTGCCGTCGACCTGCAGCAGAAATATGGAACTACCGATAGATCAACGGCTGGCTATGACACGAGCTTTGACCGTGTTCCACTTCCCCGTGTGAAATCTCTTCCTCCTACCAAAAGCAGGAAACTCCCCACTGCCAAAGCTTTGGAATTAGCCAATCATGAAACAGTAAAAGGCTCAAAATCACTTGTATTATCCAAGAACCTAAAAAGGAAAACAGACCAAACAAAGGAACGCAGTGACTTAAGTACTAGAAATGTGAGGAAAAGCCAAGGTGCTGATGGCTCTGGTATAACCTCAGCAAAAGATGCAACAAGCAACAGAATTGCTTCTGGGGAAAGGCTGAGAGAACCGATACCTTGCCAAGGTAGAAAGGAGCTTATCAGCCTGGCACAAGAAGCAATGCAGGGTGCCAATCACGAGGTGACAAGTTTCCCGGCTTCAAAAAGAAAGAGGGTTGCTGCCCCTCCAGGGAAAGTGGATAAAAAAGTTGTTTATTTCACTCCAATGCCACTGCACTCCACTGGGATTGCTATTGCTGGTGCTGGCTTGCCAAAGAACAAAGGTGAAGGAAAGCACAAGAAGGAAGGTCCATGTGTTGGAACAAAGGGGTTCAGGGCTCCAGAGGTATTGTTCAGGTCTCAACATCAAGGCCCCAAGATTGACATCTGGTCTGCTGGTGTCACATTGCTTTATCTTATCACTGGAAGAACACCTTTTGTAGGCGACCCCGATCAGAACATAAAGGAGATTGCAAGGTTGAGGGGAAGTGAAGATCTCTGGGAAGTTGCCAAGCTACACAACCGTGGATCTTCTTTCCCACCGGACCTCTTTGACGTTCAATCCTTGCCATCTACAAAACTGAGAGATTGGTGCAAACTCATAACGAGAAGACTGGACTTCCATGATGTTATACCAAGATCACTATTCGATCTTGTTGACAAGTGTTTGACAGTGAACCCGAGAGTGAGGATAAGCGCTGAGGAAGCTCTCAGGCATGAGTTTTTTGCCCCTTGCCATGAGCGATTGAGGAAGCAAAGGCTGCTAAGACAAGGGATGAGTTTGGACTCTGCAACTGTTGATGTTCTACATAAGCAGCCACAGACATGTGAAGGTTTATCATGA

Network for GWHGAAZE006296

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	509	660	4.00E-23
PF00069.26	Pkinase	841	979	2.80E-18

Protein Sequence

>GWHPAAZE006300
MEAELVTLEEHCTELSTVTNTDLQKAWHLLGLLLTIGRPVRIIELASRCTLFRAPPEFVKYLCSLPNSPLKMTGDLFVTLSSVAILAFGKFVVNSNTVTPFVSGLGGFRHKRVWEDVERTYYRKRRKLRSEFDDFPVVKKSVFSQNVKEEEANQSALALPYEIEDACAKVPISIDMSRSMITQTGHTWIMAVNSENPNQAMVTTSMHINRNVGPSTYELDDAEHGSQRQTYMSVNRKELGCVYTSEGQYSFLNFERLPHVPEAITVERTMVFVPHPELSIQTCTMENPVVLREANMDDLYSTSRIFNATSCQVDKRKIISPVEAENVVYDCKDTAKSGDDERIVDGREEEQLSGSGRHKVDAENLQTNTANANVSHEDDLRAKITVKGIATVSSPDGKKTTAYLESEAILSADLLSVEHKQLTKSLSNIKTIQKGTLNPIENITVAAHIEQQHKKSISMKQMLTQNNDKKILAKEKKRTSKENRERTTSISVKNQPEPKVLPTFESFVVKEEEGSGGYGIVYKAQRNNDGATFAIKSPHANANRHHVYNEMKMLERFGGKNFVIKYEGSFKSGGSDCLVLEHVEHDRPEILKREIDVFQLQWYGYCLFRALAGLHKQGVVHRDVKPGNFLFSRKTNKGYLIDFNLAVDLQQKYGTTDRSTAGYDTSFDRVPLPRVKSLPPTKSRKLPTAKALELANHETVKGSKSLVLSKNLKRKTDQTKERSDLSTRNVRKSQGADGSGITSAKDATSNRIASGERLREPIPCQGRKELISLAQEAMQGANHEVTSFPASKRKRVAAPPGKVDKKVVYFTPMPLHSTGIAIAGAGLPKNKGEGKHKKEGPCVGTKGFRAPEVLFRSQHQGPKIDIWSAGVTLLYLITGRTPFVGDPDQNIKEIARLRGSEDLWEVAKLHNRGSSFPPDLFDVQSLPSTKLRDWCKLITRRLDFHDVIPRSLFDLVDKCLTVNPRVRISAEEALRHEFFAPCHERLRKQRLLRQGMSLDSATVDVLHKQPQTCEGLS

Gene family

Gene family	subfamily
Protein Kinases Family	Group-Pl-2

KEGG pathway

KO	Enzyme	pathway	mapID
K02214	CDC7	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.942
	SRR3591706	second leaf	0.955
	SRR3591707	mature leaf	0.188
	SRR3591708	Shoot apex	11.262
	SRR3591709	Stem	1.920
	SRR3591710	White floral bud	0.471
	SRR3591711	White flower	0.337
	SRR3591712	Green floral bud	0.476
	SRR3591713	Yellow flower	0.090
SRP173429	SRR8316895	Juvenile bud stage	2.363
	SRR8316896	Juvenile bud stage	1.687
	SRR8316897	Juvenile bud stage	0.755
	SRR8316894	Third green stage	0.451
	SRR8316900	Third green stage	0.308
	SRR8316901	Third green stage	0.362
	SRR8316898	Complete white stage	0.028
	SRR8316899	Complete white stage	0.452
	SRR8316903	Complete white stage	0.168
	SRR8316902	Silver flowering stage	0.015
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.027
SRP132670	SRR6706286	Control	0.320
	SRR6706287	Light intensity 50%	0.443
	SRR6706288	Light intensity 20%	0.585
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.243
	CNS0095593	Slightly white alabastrum(diploid) 2	1.319
	CNS0095594	Slightly white alabastrum(diploid) 3	0.541
	CNS0095595	Whole white alabastrum(diploid) 2	0.298
	CNS0095596	Whole white alabastrum(diploid) 3	0.231
	CNS0095597	Whole white alabastrum(diploid) 4	0.419
	CNS0095598	Silvery flower (diploied) 1	0.586
	CNS0095599	Silvery flower (diploied) 2	1.088
	CNS0095600	Silvery flower (diploied) 3	0.432
	CNS0095601	Golden flower (diploid) 1	0.584
	CNS0095602	Golden flower (diploid) 2	0.499
	CNS0095603	Golden flower (diploid) 3	0.306
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.177
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.753
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.506
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.404
	CNS0095610	Silvery flower (tetraploid) 1	0.025
	CNS0095611	Silvery flower (tetraploid) 2	0.169
	CNS0095612	Silvery flower (tetraploid) 3	0.123
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.005
CRA001975	CRR073297	Stem 1	3.198
	CRR073298	Stem 2	2.486
	CRR073299	Stem 3	3.030
	CRR073300	Leaf 1	0.626
	CRR073301	Leaf 2	0.322
	CRR073302	Leaf 3	0.336
	CRR073303	Juvenile bud 1	0.485
	CRR073304	Juvenile bud 2	0.199
	CRR073305	Juvenile bud 3	0.224
	CRR073306	Third green 1	0.034
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.100
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.002
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.031
	CRR073315	Gold flowering 1	0.060
	CRR073316	Gold flowering 2	0.191
	CRR073317	Gold flowering 3	0.178
	CRR073318	Tawny withering 1	3.921
	CRR073319	Tawny withering 2	2.315
	CRR073320	Tawny withering 3	3.359