Gene detail

Detail information of GWHGAAZE006285

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002304302.1	2.60928E-63	hypothetical protein POPTR_0003s07910g [Populus trichocarpa]
Swissprot	tr\|O80338\|EF101_ARATH	2E-56	Ethylene-responsive transcription factor 2
trEMBL	tr\|B9GYN2\|B9GYN2_POPTR	1E-63	Uncharacterized protein {ECO:0000313\|EMBL:EEE79281.1}
TAIR10	AT5G47220.1	5E-37	ethylene responsive element binding factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	22598384	22598950	+
GWHAAZE00000002	mRNA	22598384	22598950	+
GWHAAZE00000002	exon	22598384	22598515	+
GWHAAZE00000002	exon	22598555	22598950	+
GWHAAZE00000002	CDS	22598384	22598515	+
GWHAAZE00000002	CDS	22598555	22598950	+

Transcript Sequence
>GWHTAAZE006293 ATGCTTGTTTACAGCGTCCTCCGTGACGCCGTTAACCTCGGCTGGATTCCGGCCACCGGTGTAGTGAAGCCGGAGCCCGAAATATTCACCGAATTTCCGAGAACTTTAAATTTCTCCGCCGGCGAGCCTCAGCCGAAGGGAAAGCATTACAGAGGCGTAAGGCAGCGACCTTGGGGGAAGTTCGCGGCGGAGATTAGAGACCCGGCGAAGAACGGAGCTAGGGTTTGGTTAGGAACATTTGAGACAGCGGAGGATGCCGCTTTGGCTTATGATAGGGCAGCTTATCGCATGCGCGGGGCACGTGCGTTACTTAATTTCCCTCTCCGGATTAATTCGGGAGAGCCGGACCCGGTTCGCGTAACGTCGAAGAGGTCGGTGAGCACACCGGAGCTGTCGGAGGGGGAGGAGCGTGGTTCGCCGAAGAGGAGGAGGAAGGTGGTGGGGTCCACAGAGGAAATGGTGCAAGCTGGGTTGGAAATGCGGGAACCGGTGCCACGCGAGGAAGAGTTGGTGGTTAATGGGTGCTGA

Network for GWHGAAZE006285

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	49	99	7.90E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.286
	SRR3591706	second leaf	8.733
	SRR3591707	mature leaf	6.670
	SRR3591708	Shoot apex	10.087
	SRR3591709	Stem	45.887
	SRR3591710	White floral bud	20.459
	SRR3591711	White flower	46.494
	SRR3591712	Green floral bud	3.996
	SRR3591713	Yellow flower	11.766
SRP173429	SRR8316895	Juvenile bud stage	1.784
	SRR8316896	Juvenile bud stage	1.584
	SRR8316897	Juvenile bud stage	0.567
	SRR8316894	Third green stage	0.204
	SRR8316900	Third green stage	0.064
	SRR8316901	Third green stage	0.778
	SRR8316898	Complete white stage	0.243
	SRR8316899	Complete white stage	1.915
	SRR8316903	Complete white stage	0.536
	SRR8316902	Silver flowering stage	0.503
	SRR8316904	Silver flowering stage	0.980
	SRR8316905	Silver flowering stage	1.056
	SRR8316906	Gold flowering stage	1.977
	SRR8316907	Gold flowering stage	2.027
	SRR8316908	Gold flowering stage	5.173
SRP132670	SRR6706286	Control	3.442
	SRR6706287	Light intensity 50%	3.841
	SRR6706288	Light intensity 20%	2.677
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.260
	CNS0095593	Slightly white alabastrum(diploid) 2	6.732
	CNS0095594	Slightly white alabastrum(diploid) 3	3.441
	CNS0095595	Whole white alabastrum(diploid) 2	2.651
	CNS0095596	Whole white alabastrum(diploid) 3	0.294
	CNS0095597	Whole white alabastrum(diploid) 4	2.818
	CNS0095598	Silvery flower (diploied) 1	15.883
	CNS0095599	Silvery flower (diploied) 2	15.639
	CNS0095600	Silvery flower (diploied) 3	11.326
	CNS0095601	Golden flower (diploid) 1	37.143
	CNS0095602	Golden flower (diploid) 2	12.945
	CNS0095603	Golden flower (diploid) 3	11.368
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.144
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.396
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.607
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.334
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.503
	CNS0095610	Silvery flower (tetraploid) 1	4.188
	CNS0095611	Silvery flower (tetraploid) 2	0.635
	CNS0095612	Silvery flower (tetraploid) 3	5.378
	CNS0095613	Golden flower (tetraploid) 1	4.205
	CNS0095614	Golden flower (tetraploid) 2	1.972
	CNS0095615	Golden flower (tetraploid) 3	0.532
CRA001975	CRR073297	Stem 1	0.679
	CRR073298	Stem 2	0.631
	CRR073299	Stem 3	4.476
	CRR073300	Leaf 1	0.218
	CRR073301	Leaf 2	0.408
	CRR073302	Leaf 3	0.493
	CRR073303	Juvenile bud 1	0.268
	CRR073304	Juvenile bud 2	1.342
	CRR073305	Juvenile bud 3	0.402
	CRR073306	Third green 1	0.648
	CRR073307	Third green 2	0.998
	CRR073308	Third green 3	1.616
	CRR073309	Second white 1	0.026
	CRR073310	Second white 2	0.681
	CRR073311	Second white 3	0.778
	CRR073312	Silver flowering 1	0.703
	CRR073313	Silver flowering 2	0.367
	CRR073314	Silver flowering 3	0.501
	CRR073315	Gold flowering 1	2.906
	CRR073316	Gold flowering 2	9.032
	CRR073317	Gold flowering 3	15.734
	CRR073318	Tawny withering 1	24.664
	CRR073319	Tawny withering 2	54.670
	CRR073320	Tawny withering 3	30.104