Detail information of GWHGAAZE006278


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010275492.14.01554E-35PREDICTED: transcription factor MYB29 [Nelumbo nucifera]
Swissprottr|Q0JIC2|GAM1_ORYSJ3E-14Transcription factor GAMYB
trEMBLtr|A0A061G0B1|A0A061G0B1_THECC3E-35Myb-like HTH transcriptional regulator family protein, putative {ECO:0000313|EMBL:EOY22813.1}
TAIR10AT3G60460.13E-15myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2241049122412561-
GWHAAZE00000002mRNA2241049122412561-
GWHAAZE00000002exon2241049122410931-
GWHAAZE00000002exon2241155722411768-
GWHAAZE00000002exon2241248922412561-
GWHAAZE00000002CDS2241248922412561-
GWHAAZE00000002CDS2241155722411768-
GWHAAZE00000002CDS2241049122410931-
Transcript Sequence

Network for GWHGAAZE006278

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding24613.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.383
SRR3591707mature leaf0.486
SRR3591708Shoot apex0.097
SRR3591709Stem0.844
SRR3591710White floral bud0.347
SRR3591711White flower1.791
SRR3591712Green floral bud0.765
SRR3591713Yellow flower6.733
SRP173429 SRR8316895Juvenile bud stage 0.246
SRR8316896Juvenile bud stage 0.348
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.376
SRR8316900Third green stage 0.023
SRR8316901Third green stage 0.210
SRR8316898Complete white stage 0.116
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.027
SRR8316902Silver flowering stage0.287
SRR8316904Silver flowering stage0.747
SRR8316905Silver flowering stage0.095
SRR8316906Gold flowering stage 2.488
SRR8316907Gold flowering stage 2.401
SRR8316908Gold flowering stage 0.779
SRP132670SRR6706286Control0.093
SRR6706287Light intensity 50%0.059
SRR6706288Light intensity 20%0.107
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.195
CNS0095593Slightly white alabastrum(diploid) 20.258
CNS0095594Slightly white alabastrum(diploid) 31.286
CNS0095595Whole white alabastrum(diploid) 20.840
CNS0095596Whole white alabastrum(diploid) 30.662
CNS0095597Whole white alabastrum(diploid) 41.773
CNS0095598Silvery flower (diploied) 10.076
CNS0095599Silvery flower (diploied) 20.343
CNS0095600Silvery flower (diploied) 31.910
CNS0095601Golden flower (diploid) 11.025
CNS0095602Golden flower (diploid) 22.055
CNS0095603Golden flower (diploid) 32.857
CNS0095604Slightly white alabastrum(tetraploid) 10.878
CNS0095605Slightly white alabastrum(tetraploid) 20.839
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.718
CNS0095608Whole white alabastrum(tetraploid) 20.372
CNS0095609Whole white alabastrum(tetraploid) 30.544
CNS0095610Silvery flower (tetraploid) 11.417
CNS0095611Silvery flower (tetraploid) 21.488
CNS0095612Silvery flower (tetraploid) 30.316
CNS0095613Golden flower (tetraploid) 11.506
CNS0095614Golden flower (tetraploid) 21.526
CNS0095615Golden flower (tetraploid) 33.977
CRA001975CRR073297Stem 10.203
CRR073298Stem 20.204
CRR073299Stem 30.051
CRR073300Leaf 10.285
CRR073301Leaf 20.484
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.414
CRR073310Second white 20.140
CRR073311Second white 30.269
CRR073312Silver flowering 12.538
CRR073313Silver flowering 21.607
CRR073314Silver flowering 32.108
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.121
CRR073320Tawny withering 30.000