Gene detail

Detail information of GWHGAAZE006277

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081287.1	2.0721E-158	PREDICTED: uncharacterized protein LOC105164353 [Sesamum indicum]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	1E-29	Transcription factor DIVARICATA
trEMBL	tr\|A0A067FDS7\|A0A067FDS7_CITSI	1E-151	Uncharacterized protein {ECO:0000313\|EMBL:KDO61361.1}
TAIR10	AT5G47390.1	3E-84	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	22395461	22400953	-
GWHAAZE00000002	mRNA	22395461	22400953	-
GWHAAZE00000002	exon	22400710	22400953	-
GWHAAZE00000002	exon	22398391	22398599	-
GWHAAZE00000002	exon	22395461	22396006	-
GWHAAZE00000002	CDS	22400710	22400953	-
GWHAAZE00000002	CDS	22398391	22398599	-
GWHAAZE00000002	CDS	22395461	22396006	-

Transcript Sequence
>GWHTAAZE006285 ATGACGAGGAGGTGCTCGCATTGCAGTAACAATGGACACAACTCTCGGACCTGTCCGAACCGTGGGGTGAAGCTGTTTGGGGTCCGATTGACCGATGGTTCTTCTTCGATCCGGAAGAGTGCCAGTATGGGCAATTTGACTCACTACACCGGAGGATCCAACAACAGCACGCCTCTAAACGGGCTATCTGGTCTCGGACACGAATCTCCCGGCGATACTCCTGATCATTCAGCTGGTGCCGATGGTGTTCCATGGACTGAAGAGGAACATAGGATGTTTCTATTGGGTTTACAAAAGCTTGGTAAAGGTGATTGGCGTGGAATCGCACGCAACTATGTAATTTCAAGAACACCCACTCAAGTGGCCAGCCATGCTCAAAAATATTTCATCAGGCAATGCAATATGTCTAGGAGAAAAAGACGGTCCAGCTTGTTTGATATCGTAGCAGATGAATCTGTCGAAACTCCAATTCCGTCCTCGAGGGATTTCTTCGCCGTCAATGCACCACAAGCCGAAGCACAGAGCAACCCATACCCTCCTGCTTTAGAGGAAGAATGCGAATCGATGGACTCTGCCAACTCCAACTCCAACTCCAATTCCAATGAACCCGAACCCGCCCTTCCAAAGCCAGAGAACCCGCAGTGCTGTTACCCAGTCGTATATCCTGCTTACATCTCTCCGTTCATTCCGTATTCTCTTCCTTTCTGGCCTGGGTGCCCTTCAGAGCCACCAAAAACTGAGGCTCATGCGGTGCTTAAGCCAACAGCGGTCCATTCAAAGAGCCCGATTAACGTGGACGAGCTGGTGGGTATGTCAAAGCTAAGCTTGGGGGAGTCGATCGGTAAAGCAGGCCCTTCTTCTCTTTCGGTGAAACTTCTAGAAGGGTCTAGTAGGCAGTCGGCCTTCCATGCTAATACGACATCTGGTGGTTCAGGCATGAACTCGAGCACCGGTCCGATCCATGCAGTCCGAAAGTTTGAAGAAGTGATGATGTGTTGA

Network for GWHGAAZE006277

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	84	128	1.20E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	171.218
	SRR3591706	second leaf	39.556
	SRR3591707	mature leaf	73.731
	SRR3591708	Shoot apex	56.684
	SRR3591709	Stem	214.364
	SRR3591710	White floral bud	134.148
	SRR3591711	White flower	252.522
	SRR3591712	Green floral bud	93.777
	SRR3591713	Yellow flower	387.208
SRP173429	SRR8316895	Juvenile bud stage	98.600
	SRR8316896	Juvenile bud stage	142.060
	SRR8316897	Juvenile bud stage	102.456
	SRR8316894	Third green stage	27.910
	SRR8316900	Third green stage	58.202
	SRR8316901	Third green stage	88.912
	SRR8316898	Complete white stage	48.497
	SRR8316899	Complete white stage	132.617
	SRR8316903	Complete white stage	88.147
	SRR8316902	Silver flowering stage	123.923
	SRR8316904	Silver flowering stage	123.448
	SRR8316905	Silver flowering stage	75.257
	SRR8316906	Gold flowering stage	289.514
	SRR8316907	Gold flowering stage	253.411
	SRR8316908	Gold flowering stage	293.316
SRP132670	SRR6706286	Control	94.908
	SRR6706287	Light intensity 50%	83.949
	SRR6706288	Light intensity 20%	77.645
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	136.150
	CNS0095593	Slightly white alabastrum(diploid) 2	127.351
	CNS0095594	Slightly white alabastrum(diploid) 3	141.879
	CNS0095595	Whole white alabastrum(diploid) 2	108.199
	CNS0095596	Whole white alabastrum(diploid) 3	53.549
	CNS0095597	Whole white alabastrum(diploid) 4	86.091
	CNS0095598	Silvery flower (diploied) 1	186.902
	CNS0095599	Silvery flower (diploied) 2	189.524
	CNS0095600	Silvery flower (diploied) 3	286.086
	CNS0095601	Golden flower (diploid) 1	261.041
	CNS0095602	Golden flower (diploid) 2	402.842
	CNS0095603	Golden flower (diploid) 3	388.783
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.753
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.708
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	46.648
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.062
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.457
	CNS0095610	Silvery flower (tetraploid) 1	269.105
	CNS0095611	Silvery flower (tetraploid) 2	286.717
	CNS0095612	Silvery flower (tetraploid) 3	139.389
	CNS0095613	Golden flower (tetraploid) 1	322.392
	CNS0095614	Golden flower (tetraploid) 2	317.278
	CNS0095615	Golden flower (tetraploid) 3	569.837
CRA001975	CRR073297	Stem 1	102.501
	CRR073298	Stem 2	98.806
	CRR073299	Stem 3	123.287
	CRR073300	Leaf 1	86.502
	CRR073301	Leaf 2	115.749
	CRR073302	Leaf 3	78.591
	CRR073303	Juvenile bud 1	89.246
	CRR073304	Juvenile bud 2	97.274
	CRR073305	Juvenile bud 3	117.902
	CRR073306	Third green 1	124.979
	CRR073307	Third green 2	128.756
	CRR073308	Third green 3	118.250
	CRR073309	Second white 1	124.168
	CRR073310	Second white 2	134.415
	CRR073311	Second white 3	144.624
	CRR073312	Silver flowering 1	346.799
	CRR073313	Silver flowering 2	353.619
	CRR073314	Silver flowering 3	340.358
	CRR073315	Gold flowering 1	106.458
	CRR073316	Gold flowering 2	154.998
	CRR073317	Gold flowering 3	140.890
	CRR073318	Tawny withering 1	167.815
	CRR073319	Tawny withering 2	298.410
	CRR073320	Tawny withering 3	164.029