Detail information of GWHGAAZE006257


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP39887.12.5476E-108hypothetical protein JCGZ_03418 [Jatropha curcas]
Swissprottr|Q84V22|PSD1_ARATH3E-93Phosphatidylserine decarboxylase 1 alpha chain (Precursor)
trEMBLtr|A0A067KUS0|A0A067KUS0_JATCU1E-108Uncharacterized protein {ECO:0000313|EMBL:KDP39887.1}
TAIR10AT4G16700.12E-73phosphatidylserine decarboxylase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2201579722029105-
GWHAAZE00000002mRNA2201579722029105-
GWHAAZE00000002exon2202902822029105-
GWHAAZE00000002exon2202224922022302-
GWHAAZE00000002exon2202207822022143-
GWHAAZE00000002exon2202127222021332-
GWHAAZE00000002exon2202018722020296-
GWHAAZE00000002exon2201975422020010-
GWHAAZE00000002exon2201750422017757-
GWHAAZE00000002exon2201719122017391-
GWHAAZE00000002exon2201631622016621-
GWHAAZE00000002exon2201579722016107-
GWHAAZE00000002CDS2202902822029105-
GWHAAZE00000002CDS2202224922022302-
GWHAAZE00000002CDS2202207822022143-
GWHAAZE00000002CDS2202127222021332-
GWHAAZE00000002CDS2202018722020296-
GWHAAZE00000002CDS2201975422020010-
GWHAAZE00000002CDS2201750422017757-
GWHAAZE00000002CDS2201719122017391-
GWHAAZE00000002CDS2201631622016621-
GWHAAZE00000002CDS2201579722016107-
Transcript Sequence

Network for GWHGAAZE006257

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02666.16PS_Dcarbxylase1011631.70E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01613psd, PISD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName
GO:0008654biological_processphospholipid biosynthetic process
GO:0004609molecular_functionphosphatidylserine decarboxylase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.990
SRR3591706second leaf4.267
SRR3591707mature leaf3.335
SRR3591708Shoot apex6.312
SRR3591709Stem3.085
SRR3591710White floral bud2.577
SRR3591711White flower2.712
SRR3591712Green floral bud2.837
SRR3591713Yellow flower2.475
SRP173429 SRR8316895Juvenile bud stage 4.212
SRR8316896Juvenile bud stage 4.710
SRR8316897Juvenile bud stage 2.275
SRR8316894Third green stage 1.902
SRR8316900Third green stage 5.273
SRR8316901Third green stage 5.009
SRR8316898Complete white stage 1.660
SRR8316899Complete white stage 7.383
SRR8316903Complete white stage 2.314
SRR8316902Silver flowering stage1.519
SRR8316904Silver flowering stage1.563
SRR8316905Silver flowering stage0.786
SRR8316906Gold flowering stage 3.612
SRR8316907Gold flowering stage 3.181
SRR8316908Gold flowering stage 2.966
SRP132670SRR6706286Control3.093
SRR6706287Light intensity 50%3.827
SRR6706288Light intensity 20%4.371
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.883
CNS0095593Slightly white alabastrum(diploid) 21.993
CNS0095594Slightly white alabastrum(diploid) 32.138
CNS0095595Whole white alabastrum(diploid) 21.976
CNS0095596Whole white alabastrum(diploid) 31.883
CNS0095597Whole white alabastrum(diploid) 41.019
CNS0095598Silvery flower (diploied) 12.177
CNS0095599Silvery flower (diploied) 22.761
CNS0095600Silvery flower (diploied) 33.462
CNS0095601Golden flower (diploid) 11.809
CNS0095602Golden flower (diploid) 23.594
CNS0095603Golden flower (diploid) 33.524
CNS0095604Slightly white alabastrum(tetraploid) 14.457
CNS0095605Slightly white alabastrum(tetraploid) 22.125
CNS0095606Slightly white alabastrum(tetraploid) 35.839
CNS0095607Whole white alabastrum(tetraploid) 13.214
CNS0095608Whole white alabastrum(tetraploid) 22.040
CNS0095609Whole white alabastrum(tetraploid) 34.345
CNS0095610Silvery flower (tetraploid) 13.371
CNS0095611Silvery flower (tetraploid) 23.561
CNS0095612Silvery flower (tetraploid) 33.661
CNS0095613Golden flower (tetraploid) 11.565
CNS0095614Golden flower (tetraploid) 22.752
CNS0095615Golden flower (tetraploid) 33.124
CRA001975CRR073297Stem 17.389
CRR073298Stem 26.179
CRR073299Stem 36.232
CRR073300Leaf 16.654
CRR073301Leaf 26.971
CRR073302Leaf 35.617
CRR073303Juvenile bud 16.016
CRR073304Juvenile bud 23.499
CRR073305Juvenile bud 34.446
CRR073306Third green 10.913
CRR073307Third green 20.977
CRR073308Third green 31.276
CRR073309Second white 11.898
CRR073310Second white 22.243
CRR073311Second white 31.744
CRR073312Silver flowering 11.652
CRR073313Silver flowering 22.203
CRR073314Silver flowering 31.098
CRR073315Gold flowering 13.720
CRR073316Gold flowering 25.555
CRR073317Gold flowering 32.403
CRR073318Tawny withering 15.761
CRR073319Tawny withering 25.309
CRR073320Tawny withering 32.804