Gene detail

Detail information of GWHGAAZE006244

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_003635124.1	PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Vitis vinifera]
Swissprot	tr\|O48593\|SYNO_ARATH	Asparagine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|D7U3N1\|D7U3N1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37350.3}
TAIR10	AT4G17300.1	Class II aminoacyl-tRNA and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	21780957	21791825	+
GWHAAZE00000002	mRNA	21780957	21791825	+
GWHAAZE00000002	exon	21780957	21781418	+
GWHAAZE00000002	exon	21783019	21783087	+
GWHAAZE00000002	exon	21783952	21784062	+
GWHAAZE00000002	exon	21784360	21784464	+
GWHAAZE00000002	exon	21785783	21785920	+
GWHAAZE00000002	exon	21787327	21787407	+
GWHAAZE00000002	exon	21788997	21789065	+
GWHAAZE00000002	exon	21789158	21789232	+
GWHAAZE00000002	exon	21789334	21789417	+
GWHAAZE00000002	exon	21789562	21789648	+
GWHAAZE00000002	exon	21790307	21790381	+
GWHAAZE00000002	exon	21791109	21791235	+
GWHAAZE00000002	exon	21791710	21791825	+
GWHAAZE00000002	CDS	21780957	21781418	+
GWHAAZE00000002	CDS	21783019	21783087	+
GWHAAZE00000002	CDS	21783952	21784062	+
GWHAAZE00000002	CDS	21784360	21784464	+
GWHAAZE00000002	CDS	21785783	21785920	+
GWHAAZE00000002	CDS	21787327	21787407	+
GWHAAZE00000002	CDS	21788997	21789065	+
GWHAAZE00000002	CDS	21789158	21789232	+
GWHAAZE00000002	CDS	21789334	21789417	+
GWHAAZE00000002	CDS	21789562	21789648	+
GWHAAZE00000002	CDS	21790307	21790381	+
GWHAAZE00000002	CDS	21791109	21791235	+
GWHAAZE00000002	CDS	21791710	21791825	+

Transcript Sequence
>GWHTAAZE006252 ATGGCCGTAGCTCTGTCTCCGGCCACCACTTCCTTCCACCGAATCAAACACTTACCCGCCGCCCGATTCCTCTCTTTCTACCGCCCTACCGTAAACCCTAAAACCCTTGTCCCCTCAACCACCAAACATCTACTTCTCTCCCCAAAATTCAACACTCCTCCTCCTCCTACGTCACTCTTTTCCGGCACTGGCTCTTCTTTCTCCGTACGCAATCGTCGGTGTCTTTTTACAGTCGCCGGAGCTCTGTCCTCCGGCGAGGCCGTAGAGAAGCAGACAACAGAGGTTTACAATAAGCCGGGATTAGAAAGTCGGGGGGAGAAAGTAGGGGAATTTCGCAAGAGGTTAAGGATTGTGGATATTAAAGGAGGGCCCGATGAGGGATTGGATAAATTAGGGCAAACTATTGCAGTTAAGGGTTGGGTGAGGACACTCCGTGTGCAGAGTAGCGTCACATTCATCGAGGTTAATGATGGGTCATGCCTTTCAAATATGCAATGTGTGATGAACTCAGATGCTGAAGGTTATGATCAGGTGGAGAGTGGCTTGGTCACGACTGGTGCATCTGTATCCGTCCAAGGAACTGTAAAAACCAGCCCGGGATCAAAGCAGAAAGTAGAATTGGGGGTTGAGAAACTCGTTACGGTTGGTAAGAGTGATCCTTCATTTCCAATCCAGAAGAAAAGGGTCAGCAGAGAATTTCTGAGAACCAAGGCCCATCTTCGTCCTAGAACAAATACCTTTGGTGCGGTAGCGAGGGTGAGGAATGCTCTAGCCTATGCTACACACAAGTTTTTTCAAGAAAATGGCTTTGTTTGGATCTCAAGTCCTATTATCACTGCTTCAGATTGTGAAGGAGCTGGCGAGCAGTTTTGTGTGACCACTTTGATACCGAGTGTCAGAGAAGCTACTGAGTCCCCAGCTGATGCACTCCCTAAAACAAAATCTGGTTCAATTGATTGGTCACAAGTCTATACATTTGGTCCCACATTCCGAGCAGAAAATTCTAACACTTCTAGACACTTGGCTGAGTTTTGGATGATTGAACCAGAGCTAGCATTTGCTGACTTGAACGATGACATGGCCTGTGCAACTGCCTATCTCCAGTATGTAGTAAAATATGTTCTTGAAAACTGCAAGGAAGATATGGATTTCTTCAATACTTGGATTGAGAAAGGAATTATCAACCGGCTGACAGATGTGGTCGAGAAGAACTTTGTGCAGTTGAGTTACACAGATGCAGTTAAACTTCTTCTCCAAGCAAAAAAGAAGTTTGAATTCCCGGAGATCAAGGCATTTTATATGCGGCAAAATGATGATGGAAAGACTGTTGCGGCCATGGATATGTTGGTTCCTCGGGTTGGTGAACTTATTGGCGGAAGCCAAAGAGAAGAACGTCTGGAATTTCTTGAAGAACGATTAGATGAATTGAAGCTCAGTAAAGAAAGCTACTGGTGGTATCTTGATCTGCGGCGATATGGTTCAGTTCCTCATGCCGGCTTTGGATTAGGGTTCGAGAGGCTTGTGCAATTTGCAACCGGAATAGATAATATAAGAGATGCAATACCTTTTCCTCGGGCACCTGGCTCTGCTGAATTTTGA

Network for GWHGAAZE006244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01336.26	tRNA_anti-codon	137	212	2.30E-09
PF00152.21	tRNA-synt_2	231	525	4.70E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01893	NARS, asnS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.065
	SRR3591706	second leaf	39.641
	SRR3591707	mature leaf	34.924
	SRR3591708	Shoot apex	35.821
	SRR3591709	Stem	17.081
	SRR3591710	White floral bud	21.093
	SRR3591711	White flower	25.615
	SRR3591712	Green floral bud	24.658
	SRR3591713	Yellow flower	23.258
SRP173429	SRR8316895	Juvenile bud stage	20.165
	SRR8316896	Juvenile bud stage	27.092
	SRR8316897	Juvenile bud stage	13.642
	SRR8316894	Third green stage	11.569
	SRR8316900	Third green stage	32.041
	SRR8316901	Third green stage	28.220
	SRR8316898	Complete white stage	7.463
	SRR8316899	Complete white stage	31.554
	SRR8316903	Complete white stage	15.445
	SRR8316902	Silver flowering stage	7.475
	SRR8316904	Silver flowering stage	11.338
	SRR8316905	Silver flowering stage	5.627
	SRR8316906	Gold flowering stage	20.272
	SRR8316907	Gold flowering stage	19.881
	SRR8316908	Gold flowering stage	22.329
SRP132670	SRR6706286	Control	33.974
	SRR6706287	Light intensity 50%	31.177
	SRR6706288	Light intensity 20%	35.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.942
	CNS0095593	Slightly white alabastrum(diploid) 2	16.798
	CNS0095594	Slightly white alabastrum(diploid) 3	16.296
	CNS0095595	Whole white alabastrum(diploid) 2	15.481
	CNS0095596	Whole white alabastrum(diploid) 3	15.702
	CNS0095597	Whole white alabastrum(diploid) 4	11.105
	CNS0095598	Silvery flower (diploied) 1	23.694
	CNS0095599	Silvery flower (diploied) 2	19.762
	CNS0095600	Silvery flower (diploied) 3	21.655
	CNS0095601	Golden flower (diploid) 1	19.484
	CNS0095602	Golden flower (diploid) 2	23.045
	CNS0095603	Golden flower (diploid) 3	24.635
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.375
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.240
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.041
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.762
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.327
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.392
	CNS0095610	Silvery flower (tetraploid) 1	31.155
	CNS0095611	Silvery flower (tetraploid) 2	34.807
	CNS0095612	Silvery flower (tetraploid) 3	30.615
	CNS0095613	Golden flower (tetraploid) 1	20.742
	CNS0095614	Golden flower (tetraploid) 2	28.927
	CNS0095615	Golden flower (tetraploid) 3	25.962
CRA001975	CRR073297	Stem 1	32.130
	CRR073298	Stem 2	29.365
	CRR073299	Stem 3	31.085
	CRR073300	Leaf 1	26.439
	CRR073301	Leaf 2	23.717
	CRR073302	Leaf 3	21.250
	CRR073303	Juvenile bud 1	21.383
	CRR073304	Juvenile bud 2	16.444
	CRR073305	Juvenile bud 3	20.635
	CRR073306	Third green 1	2.975
	CRR073307	Third green 2	2.141
	CRR073308	Third green 3	3.703
	CRR073309	Second white 1	9.602
	CRR073310	Second white 2	12.478
	CRR073311	Second white 3	11.774
	CRR073312	Silver flowering 1	12.261
	CRR073313	Silver flowering 2	10.901
	CRR073314	Silver flowering 3	9.912
	CRR073315	Gold flowering 1	28.907
	CRR073316	Gold flowering 2	55.491
	CRR073317	Gold flowering 3	26.161
	CRR073318	Tawny withering 1	11.932
	CRR073319	Tawny withering 2	13.514
	CRR073320	Tawny withering 3	13.892