Detail information of GWHGAAZE006242


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004242001.12.0795E-137PREDICTED: peroxisome biogenesis protein 19-2 [Solanum lycopersicum]
Swissprottr|Q94EI3|PE192_ARATH7E-109Peroxisome biogenesis protein 19-2 (Precursor)
trEMBLtr|K4C6Q2|K4C6Q2_SOLLC8E-138Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g060720.2.1}
TAIR10AT5G17550.11E-78peroxin 19-2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2174672521755993-
GWHAAZE00000002mRNA2174672521755993-
GWHAAZE00000002exon2175595421755993-
GWHAAZE00000002exon2175581321755858-
GWHAAZE00000002exon2175413921754415-
GWHAAZE00000002exon2174720521747521-
GWHAAZE00000002exon2174672521746770-
GWHAAZE00000002CDS2175595421755993-
GWHAAZE00000002CDS2175581321755858-
GWHAAZE00000002CDS2175413921754415-
GWHAAZE00000002CDS2174720521747521-
GWHAAZE00000002CDS2174672521746770-
Transcript Sequence

Network for GWHGAAZE006242

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0010map04146 Peroxisome
map04146 Peroxisome
Transcription factor MYB family Transcription factor MYB


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04614.13Pex19412418.90E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13337PEX19 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0005777cellular_componentperoxisome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.331
SRR3591706second leaf23.570
SRR3591707mature leaf25.334
SRR3591708Shoot apex27.577
SRR3591709Stem31.031
SRR3591710White floral bud65.729
SRR3591711White flower67.962
SRR3591712Green floral bud73.519
SRR3591713Yellow flower70.981
SRP173429 SRR8316895Juvenile bud stage 36.374
SRR8316896Juvenile bud stage 53.802
SRR8316897Juvenile bud stage 24.619
SRR8316894Third green stage 24.840
SRR8316900Third green stage 79.034
SRR8316901Third green stage 82.783
SRR8316898Complete white stage 30.258
SRR8316899Complete white stage 74.167
SRR8316903Complete white stage 48.228
SRR8316902Silver flowering stage39.439
SRR8316904Silver flowering stage50.185
SRR8316905Silver flowering stage25.602
SRR8316906Gold flowering stage 78.892
SRR8316907Gold flowering stage 79.821
SRR8316908Gold flowering stage 81.503
SRP132670SRR6706286Control94.019
SRR6706287Light intensity 50%84.010
SRR6706288Light intensity 20%91.118
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.998
CNS0095593Slightly white alabastrum(diploid) 264.180
CNS0095594Slightly white alabastrum(diploid) 368.315
CNS0095595Whole white alabastrum(diploid) 263.701
CNS0095596Whole white alabastrum(diploid) 370.387
CNS0095597Whole white alabastrum(diploid) 466.006
CNS0095598Silvery flower (diploied) 162.741
CNS0095599Silvery flower (diploied) 252.927
CNS0095600Silvery flower (diploied) 368.913
CNS0095601Golden flower (diploid) 155.753
CNS0095602Golden flower (diploid) 261.001
CNS0095603Golden flower (diploid) 365.501
CNS0095604Slightly white alabastrum(tetraploid) 151.468
CNS0095605Slightly white alabastrum(tetraploid) 259.465
CNS0095606Slightly white alabastrum(tetraploid) 348.508
CNS0095607Whole white alabastrum(tetraploid) 145.057
CNS0095608Whole white alabastrum(tetraploid) 250.580
CNS0095609Whole white alabastrum(tetraploid) 356.383
CNS0095610Silvery flower (tetraploid) 178.317
CNS0095611Silvery flower (tetraploid) 263.985
CNS0095612Silvery flower (tetraploid) 358.521
CNS0095613Golden flower (tetraploid) 171.812
CNS0095614Golden flower (tetraploid) 272.917
CNS0095615Golden flower (tetraploid) 363.309
CRA001975CRR073297Stem 140.846
CRR073298Stem 243.218
CRR073299Stem 337.568
CRR073300Leaf 143.833
CRR073301Leaf 243.336
CRR073302Leaf 331.828
CRR073303Juvenile bud 140.048
CRR073304Juvenile bud 240.905
CRR073305Juvenile bud 328.341
CRR073306Third green 120.808
CRR073307Third green 219.607
CRR073308Third green 322.460
CRR073309Second white 120.969
CRR073310Second white 231.755
CRR073311Second white 319.904
CRR073312Silver flowering 115.461
CRR073313Silver flowering 217.019
CRR073314Silver flowering 324.172
CRR073315Gold flowering 134.742
CRR073316Gold flowering 243.524
CRR073317Gold flowering 320.594
CRR073318Tawny withering 130.198
CRR073319Tawny withering 228.952
CRR073320Tawny withering 325.911