Detail information of GWHGAAZE006228


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009602609.10PREDICTED: L-lactate dehydrogenase B-like [Nicotiana tomentosiformis]
Swissprottr|P22988|LDHA_HORVU1E-165L-lactate dehydrogenase A
trEMBLtr|B9SIT3|B9SIT3_RICCO0L-lactate dehydrogenase {ECO:0000256|RuleBase:RU000496}
TAIR10AT4G17260.12E-159Lactate/malate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2149838221500091-
GWHAAZE00000002mRNA2149838221500091-
GWHAAZE00000002exon2149991521500091-
GWHAAZE00000002exon2149939421499825-
GWHAAZE00000002exon2149838221498825-
GWHAAZE00000002CDS2149991521500091-
GWHAAZE00000002CDS2149939421499825-
GWHAAZE00000002CDS2149838221498825-
Transcript Sequence

Network for GWHGAAZE006228

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00056.24Ldh_1_N381773.30E-44
PF02866.19Ldh_1_C1803414.30E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00016LDH, ldh Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Glycolysis / Gluconeogenesismap00010
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Cysteine and methionine metabolismmap00270
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005975biological_processcarbohydrate metabolic process
GO:0019752biological_processcarboxylic acid metabolic process
GO:0005737cellular_componentcytoplasm
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016491molecular_functionoxidoreductase activity
GO:0004459molecular_functionL-lactate dehydrogenase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.867
SRR3591706second leaf3.918
SRR3591707mature leaf0.831
SRR3591708Shoot apex13.424
SRR3591709Stem7.460
SRR3591710White floral bud3.358
SRR3591711White flower6.700
SRR3591712Green floral bud3.692
SRR3591713Yellow flower1.788
SRP173429 SRR8316895Juvenile bud stage 3.507
SRR8316896Juvenile bud stage 4.323
SRR8316897Juvenile bud stage 1.663
SRR8316894Third green stage 1.214
SRR8316900Third green stage 3.455
SRR8316901Third green stage 3.629
SRR8316898Complete white stage 1.263
SRR8316899Complete white stage 3.488
SRR8316903Complete white stage 0.926
SRR8316902Silver flowering stage1.420
SRR8316904Silver flowering stage1.436
SRR8316905Silver flowering stage0.428
SRR8316906Gold flowering stage 7.619
SRR8316907Gold flowering stage 2.700
SRR8316908Gold flowering stage 13.061
SRP132670SRR6706286Control4.379
SRR6706287Light intensity 50%4.674
SRR6706288Light intensity 20%4.288
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.443
CNS0095593Slightly white alabastrum(diploid) 211.123
CNS0095594Slightly white alabastrum(diploid) 36.731
CNS0095595Whole white alabastrum(diploid) 29.015
CNS0095596Whole white alabastrum(diploid) 31.793
CNS0095597Whole white alabastrum(diploid) 42.849
CNS0095598Silvery flower (diploied) 11.715
CNS0095599Silvery flower (diploied) 23.253
CNS0095600Silvery flower (diploied) 32.274
CNS0095601Golden flower (diploid) 16.103
CNS0095602Golden flower (diploid) 22.884
CNS0095603Golden flower (diploid) 32.171
CNS0095604Slightly white alabastrum(tetraploid) 12.864
CNS0095605Slightly white alabastrum(tetraploid) 23.641
CNS0095606Slightly white alabastrum(tetraploid) 34.973
CNS0095607Whole white alabastrum(tetraploid) 11.157
CNS0095608Whole white alabastrum(tetraploid) 21.383
CNS0095609Whole white alabastrum(tetraploid) 32.572
CNS0095610Silvery flower (tetraploid) 10.614
CNS0095611Silvery flower (tetraploid) 20.355
CNS0095612Silvery flower (tetraploid) 30.645
CNS0095613Golden flower (tetraploid) 10.843
CNS0095614Golden flower (tetraploid) 20.615
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 111.753
CRR073298Stem 212.758
CRR073299Stem 317.879
CRR073300Leaf 18.110
CRR073301Leaf 29.753
CRR073302Leaf 310.461
CRR073303Juvenile bud 18.820
CRR073304Juvenile bud 27.244
CRR073305Juvenile bud 311.187
CRR073306Third green 10.606
CRR073307Third green 20.226
CRR073308Third green 31.411
CRR073309Second white 12.111
CRR073310Second white 23.140
CRR073311Second white 38.840
CRR073312Silver flowering 14.019
CRR073313Silver flowering 25.392
CRR073314Silver flowering 33.003
CRR073315Gold flowering 12.354
CRR073316Gold flowering 22.187
CRR073317Gold flowering 36.411
CRR073318Tawny withering 130.288
CRR073319Tawny withering 257.226
CRR073320Tawny withering 39.032