Detail information of GWHGAAZE006210


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09916.10unnamed protein product [Coffea canephora]
Swissprottr|P29001|INVA_VIGRR0Acid beta-fructofuranosidase 38 kDa subunit (Precursor)
trEMBLtr|A0A068UN82|A0A068UN82_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313|EMBL:CDP09916.1}
TAIR10AT1G12240.10Glycosyl hydrolases family 32 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2114241821146949-
GWHAAZE00000002mRNA2114241821146949-
GWHAAZE00000002exon2114241821142764-
GWHAAZE00000002exon2114313321143174-
GWHAAZE00000002exon2114362121143708-
GWHAAZE00000002exon2114399121144226-
GWHAAZE00000002exon2114486221145023-
GWHAAZE00000002exon2114531321146169-
GWHAAZE00000002exon2114676321146949-
GWHAAZE00000002CDS2114676321146949-
GWHAAZE00000002CDS2114531321146169-
GWHAAZE00000002CDS2114486221145023-
GWHAAZE00000002CDS2114399121144226-
GWHAAZE00000002CDS2114362121143708-
GWHAAZE00000002CDS2114313321143174-
GWHAAZE00000002CDS2114255221142764-
GWHAAZE00000002three_prime_UTR2114241821142551-
Transcript Sequence

Network for GWHGAAZE006210

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00251.21Glyco_hydro_32N533689.80E-96
PF08244.13Glyco_hydro_32C3715762.00E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01193INV, sacA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Galactose metabolismmap00052
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.001
SRR3591706second leaf12.341
SRR3591707mature leaf21.210
SRR3591708Shoot apex12.894
SRR3591709Stem22.996
SRR3591710White floral bud20.488
SRR3591711White flower11.289
SRR3591712Green floral bud33.308
SRR3591713Yellow flower8.261
SRP173429 SRR8316895Juvenile bud stage 11.998
SRR8316896Juvenile bud stage 23.656
SRR8316897Juvenile bud stage 7.360
SRR8316894Third green stage 15.043
SRR8316900Third green stage 64.873
SRR8316901Third green stage 63.816
SRR8316898Complete white stage 44.681
SRR8316899Complete white stage 109.040
SRR8316903Complete white stage 59.055
SRR8316902Silver flowering stage47.012
SRR8316904Silver flowering stage59.611
SRR8316905Silver flowering stage39.966
SRR8316906Gold flowering stage 124.662
SRR8316907Gold flowering stage 97.177
SRR8316908Gold flowering stage 83.200
SRP132670SRR6706286Control87.075
SRR6706287Light intensity 50%89.360
SRR6706288Light intensity 20%90.404
CNP0000432CNS0095592Slightly white alabastrum(diploid) 134.829
CNS0095593Slightly white alabastrum(diploid) 244.168
CNS0095594Slightly white alabastrum(diploid) 329.870
CNS0095595Whole white alabastrum(diploid) 241.690
CNS0095596Whole white alabastrum(diploid) 344.714
CNS0095597Whole white alabastrum(diploid) 449.137
CNS0095598Silvery flower (diploied) 118.005
CNS0095599Silvery flower (diploied) 222.705
CNS0095600Silvery flower (diploied) 355.783
CNS0095601Golden flower (diploid) 116.187
CNS0095602Golden flower (diploid) 239.568
CNS0095603Golden flower (diploid) 335.564
CNS0095604Slightly white alabastrum(tetraploid) 148.217
CNS0095605Slightly white alabastrum(tetraploid) 242.365
CNS0095606Slightly white alabastrum(tetraploid) 3112.105
CNS0095607Whole white alabastrum(tetraploid) 146.508
CNS0095608Whole white alabastrum(tetraploid) 247.319
CNS0095609Whole white alabastrum(tetraploid) 387.163
CNS0095610Silvery flower (tetraploid) 160.273
CNS0095611Silvery flower (tetraploid) 250.379
CNS0095612Silvery flower (tetraploid) 334.836
CNS0095613Golden flower (tetraploid) 123.489
CNS0095614Golden flower (tetraploid) 237.751
CNS0095615Golden flower (tetraploid) 322.063
CRA001975CRR073297Stem 126.678
CRR073298Stem 227.435
CRR073299Stem 316.328
CRR073300Leaf 181.898
CRR073301Leaf 268.345
CRR073302Leaf 378.082
CRR073303Juvenile bud 184.670
CRR073304Juvenile bud 2108.765
CRR073305Juvenile bud 3120.047
CRR073306Third green 1118.508
CRR073307Third green 288.499
CRR073308Third green 394.784
CRR073309Second white 138.294
CRR073310Second white 237.480
CRR073311Second white 336.129
CRR073312Silver flowering 129.202
CRR073313Silver flowering 228.365
CRR073314Silver flowering 323.164
CRR073315Gold flowering 17.936
CRR073316Gold flowering 211.153
CRR073317Gold flowering 310.864
CRR073318Tawny withering 111.494
CRR073319Tawny withering 27.145
CRR073320Tawny withering 37.734