Detail information of GWHGAAZE006190


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009362126.10PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Pyrus x bretschneideri]
Swissprottr|Q6R2J8|SRF8_ARATH2E-54Protein STRUBBELIG-RECEPTOR FAMILY 8 (Precursor)
trEMBLtr|A0A068UNK0|A0A068UNK0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313|EMBL:CDP09887.1}
TAIR10AT4G22730.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2085377420856876-
GWHAAZE00000002mRNA2085377420856876-
GWHAAZE00000002exon2085644720856876-
GWHAAZE00000002exon2085585520856115-
GWHAAZE00000002exon2085509420855729-
GWHAAZE00000002exon2085486020854952-
GWHAAZE00000002exon2085377420854225-
GWHAAZE00000002CDS2085644720856876-
GWHAAZE00000002CDS2085585520856115-
GWHAAZE00000002CDS2085509420855729-
GWHAAZE00000002CDS2085486020854952-
GWHAAZE00000002CDS2085377420854225-
Transcript Sequence

Network for GWHGAAZE006190

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_225655.90E-09
PF13855.7LRR_81412006.40E-09
PF07714.18PK_Tyr_Ser-Thr4556237.70E-20
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-IV

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.433
SRR3591706second leaf0.967
SRR3591707mature leaf1.362
SRR3591708Shoot apex1.578
SRR3591709Stem3.175
SRR3591710White floral bud2.229
SRR3591711White flower6.215
SRR3591712Green floral bud4.923
SRR3591713Yellow flower10.920
SRP173429 SRR8316895Juvenile bud stage 2.103
SRR8316896Juvenile bud stage 3.318
SRR8316897Juvenile bud stage 0.815
SRR8316894Third green stage 3.321
SRR8316900Third green stage 9.151
SRR8316901Third green stage 6.734
SRR8316898Complete white stage 1.178
SRR8316899Complete white stage 6.156
SRR8316903Complete white stage 2.098
SRR8316902Silver flowering stage2.231
SRR8316904Silver flowering stage1.687
SRR8316905Silver flowering stage1.251
SRR8316906Gold flowering stage 8.226
SRR8316907Gold flowering stage 4.936
SRR8316908Gold flowering stage 6.965
SRP132670SRR6706286Control6.987
SRR6706287Light intensity 50%6.466
SRR6706288Light intensity 20%7.661
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.812
CNS0095593Slightly white alabastrum(diploid) 22.797
CNS0095594Slightly white alabastrum(diploid) 31.977
CNS0095595Whole white alabastrum(diploid) 22.276
CNS0095596Whole white alabastrum(diploid) 32.977
CNS0095597Whole white alabastrum(diploid) 41.267
CNS0095598Silvery flower (diploied) 13.662
CNS0095599Silvery flower (diploied) 22.144
CNS0095600Silvery flower (diploied) 35.788
CNS0095601Golden flower (diploid) 12.065
CNS0095602Golden flower (diploid) 27.245
CNS0095603Golden flower (diploid) 38.190
CNS0095604Slightly white alabastrum(tetraploid) 16.280
CNS0095605Slightly white alabastrum(tetraploid) 23.195
CNS0095606Slightly white alabastrum(tetraploid) 315.513
CNS0095607Whole white alabastrum(tetraploid) 11.361
CNS0095608Whole white alabastrum(tetraploid) 21.702
CNS0095609Whole white alabastrum(tetraploid) 38.501
CNS0095610Silvery flower (tetraploid) 111.496
CNS0095611Silvery flower (tetraploid) 29.296
CNS0095612Silvery flower (tetraploid) 33.811
CNS0095613Golden flower (tetraploid) 14.786
CNS0095614Golden flower (tetraploid) 29.472
CNS0095615Golden flower (tetraploid) 33.636
CRA001975CRR073297Stem 18.818
CRR073298Stem 28.091
CRR073299Stem 38.908
CRR073300Leaf 17.174
CRR073301Leaf 25.839
CRR073302Leaf 37.241
CRR073303Juvenile bud 18.118
CRR073304Juvenile bud 23.777
CRR073305Juvenile bud 34.989
CRR073306Third green 11.271
CRR073307Third green 20.539
CRR073308Third green 31.174
CRR073309Second white 12.068
CRR073310Second white 20.459
CRR073311Second white 30.652
CRR073312Silver flowering 12.381
CRR073313Silver flowering 22.140
CRR073314Silver flowering 31.719
CRR073315Gold flowering 12.486
CRR073316Gold flowering 23.117
CRR073317Gold flowering 33.012
CRR073318Tawny withering 111.148
CRR073319Tawny withering 25.762
CRR073320Tawny withering 38.895