Gene detail

Detail information of GWHGAAZE006151

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006477349.1	9.2871E-135	PREDICTED: uncharacterized protein LOC102625350 [Citrus sinensis]
Swissprot	tr\|A7VLV1\|SGRW_PEA	9E-120	Protein STAY-GREEN, chloroplastic (Precursor)
trEMBL	tr\|A0A067FKB9\|A0A067FKB9_CITSI	4E-135	Uncharacterized protein {ECO:0000313\|EMBL:KDO63636.1}
TAIR10	AT4G22920.1	2E-89	non-yellowing 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	20195518	20197021	+
GWHAAZE00000002	mRNA	20195518	20197021	+
GWHAAZE00000002	exon	20195518	20195640	+
GWHAAZE00000002	exon	20195765	20195938	+
GWHAAZE00000002	exon	20196370	20196537	+
GWHAAZE00000002	exon	20196644	20197021	+
GWHAAZE00000002	CDS	20195518	20195640	+
GWHAAZE00000002	CDS	20195765	20195938	+
GWHAAZE00000002	CDS	20196370	20196537	+
GWHAAZE00000002	CDS	20196644	20197021	+

Transcript Sequence
>GWHTAAZE006159 ATGGGTACCATGACTGCATCTCTTGTACTCCCATCAAAGCTAAAGCCCTATGAGAAACCAAGCTCTATTTTCCTCTACAAAAAAAGAAAGCCCAACAATAATCACACTCGCCCCTTATTCCCTGTTGCTAGGTTATTTGGGCCAGCTATATTTGAAGCTTCAAAGCTCAAGGTTCTTTTTCTTGGGGTTGATGAAAAGAAGCACCCGGGGAATCTTCCAAGAACTTACACACTTACCCACAGTGATATTACCTCTAAGCTCACTCTGGCTGTTTCTCAAACTATTAATAATTCTCAGTTTCAAGGATGGTATAATAAATTACAGAGAGATGAAGTGGTGGCAGAATGGAAGAAAATCAAAGGGAAAATGTCTCTTCATGTGCATGTTCACATAAGTGGTGGCCATTTCCTTCTAGACATGTGTGCTAGACTTAGATACTTCATCTTCTCCAAAGAACTCCCCGTGGTATTGAAGGCATTTGTACACGGAGATGGGAATTTGTTCAACAAGTACCCGGAATTAGTGGAAGCATTAGTATGGGTGTATTTCCATTCAAACATACCAGAATTCAACAAGGTGGAGTGTTGGGGCCCACTTATGGAAGCCGCAGCCCCACATGGTGGCGGCCCCAGAAATTATAACCACAAGCTGTACAATGAAAATGAAGAGGGGAAGGAGAAGAAAGAAGGACCAGCAAGCAACTGGGACATACCACAAGCCTGCCAAGAAGCTTGCACATGTTGCTTCCCACCAATCAGCTTAATTCCTTGTTCACCATATCTTTCTATTGGTAGTTCAACTACTAACCAAGAAACCAACCAGAGCTTTCAACAACAAACCTAA

Network for GWHGAAZE006151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12638.8	Staygreen	51	201	9.60E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22013	SGR, SGRL	Biosynthesis of secondary metabolites	map01110
K22013	SGR, SGRL	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.244
	SRR3591706	second leaf	37.439
	SRR3591707	mature leaf	69.235
	SRR3591708	Shoot apex	15.611
	SRR3591709	Stem	175.810
	SRR3591710	White floral bud	1519.684
	SRR3591711	White flower	1644.043
	SRR3591712	Green floral bud	155.146
	SRR3591713	Yellow flower	1542.868
SRP173429	SRR8316895	Juvenile bud stage	41.754
	SRR8316896	Juvenile bud stage	57.353
	SRR8316897	Juvenile bud stage	25.103
	SRR8316894	Third green stage	20.974
	SRR8316900	Third green stage	85.518
	SRR8316901	Third green stage	106.232
	SRR8316898	Complete white stage	428.257
	SRR8316899	Complete white stage	174.996
	SRR8316903	Complete white stage	595.908
	SRR8316902	Silver flowering stage	687.236
	SRR8316904	Silver flowering stage	826.392
	SRR8316905	Silver flowering stage	536.429
	SRR8316906	Gold flowering stage	2138.024
	SRR8316907	Gold flowering stage	1666.051
	SRR8316908	Gold flowering stage	1809.360
SRP132670	SRR6706286	Control	85.603
	SRR6706287	Light intensity 50%	101.459
	SRR6706288	Light intensity 20%	77.218
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.716
	CNS0095593	Slightly white alabastrum(diploid) 2	38.628
	CNS0095594	Slightly white alabastrum(diploid) 3	54.014
	CNS0095595	Whole white alabastrum(diploid) 2	38.957
	CNS0095596	Whole white alabastrum(diploid) 3	46.241
	CNS0095597	Whole white alabastrum(diploid) 4	62.859
	CNS0095598	Silvery flower (diploied) 1	271.923
	CNS0095599	Silvery flower (diploied) 2	360.904
	CNS0095600	Silvery flower (diploied) 3	1068.965
	CNS0095601	Golden flower (diploid) 1	416.014
	CNS0095602	Golden flower (diploid) 2	826.395
	CNS0095603	Golden flower (diploid) 3	811.675
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.258
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.954
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.421
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.702
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.813
	CNS0095609	Whole white alabastrum(tetraploid) 3	132.174
	CNS0095610	Silvery flower (tetraploid) 1	1198.032
	CNS0095611	Silvery flower (tetraploid) 2	1193.897
	CNS0095612	Silvery flower (tetraploid) 3	1989.248
	CNS0095613	Golden flower (tetraploid) 1	1539.887
	CNS0095614	Golden flower (tetraploid) 2	1369.273
	CNS0095615	Golden flower (tetraploid) 3	2086.035
CRA001975	CRR073297	Stem 1	24.696
	CRR073298	Stem 2	18.091
	CRR073299	Stem 3	20.483
	CRR073300	Leaf 1	47.869
	CRR073301	Leaf 2	34.990
	CRR073302	Leaf 3	31.590
	CRR073303	Juvenile bud 1	50.742
	CRR073304	Juvenile bud 2	257.199
	CRR073305	Juvenile bud 3	40.598
	CRR073306	Third green 1	973.712
	CRR073307	Third green 2	750.899
	CRR073308	Third green 3	728.986
	CRR073309	Second white 1	1047.242
	CRR073310	Second white 2	1322.581
	CRR073311	Second white 3	861.623
	CRR073312	Silver flowering 1	644.962
	CRR073313	Silver flowering 2	576.965
	CRR073314	Silver flowering 3	577.590
	CRR073315	Gold flowering 1	28.957
	CRR073316	Gold flowering 2	32.967
	CRR073317	Gold flowering 3	16.247
	CRR073318	Tawny withering 1	41.020
	CRR073319	Tawny withering 2	54.046
	CRR073320	Tawny withering 3	30.545