Detail information of GWHGAAZE006149


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275783.10PREDICTED: phospholipase D beta 1-like [Vitis vinifera]
Swissprottr|P93733|PLDB1_ARATH0Phospholipase D beta 1
trEMBLtr|F6HUI8|F6HUI8_VITVI0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}
TAIR10AT2G42010.10phospholipase D beta 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2004434720057527-
GWHAAZE00000002mRNA2004434720057527-
GWHAAZE00000002exon2005657120057527-
GWHAAZE00000002exon2005176020052665-
GWHAAZE00000002exon2005135220051468-
GWHAAZE00000002exon2004958920049783-
GWHAAZE00000002exon2004860320048743-
GWHAAZE00000002exon2004729720047365-
GWHAAZE00000002exon2004708220047226-
GWHAAZE00000002exon2004624720046395-
GWHAAZE00000002exon2004591020046086-
GWHAAZE00000002exon2004563220045828-
GWHAAZE00000002exon2004434720044554-
GWHAAZE00000002CDS2005657120057527-
GWHAAZE00000002CDS2005176020052665-
GWHAAZE00000002CDS2005135220051468-
GWHAAZE00000002CDS2004958920049783-
GWHAAZE00000002CDS2004860320048743-
GWHAAZE00000002CDS2004729720047365-
GWHAAZE00000002CDS2004708220047226-
GWHAAZE00000002CDS2004624720046395-
GWHAAZE00000002CDS2004591020046086-
GWHAAZE00000002CDS2004563220045828-
GWHAAZE00000002CDS2004434720044554-
Transcript Sequence

Network for GWHGAAZE006149

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00168.31C2391631.00E-24
PF00168.31C23384651.40E-24
PF00614.23PLDc6656997.00E-09
PF00614.23PLDc9629881.20E-07
PF12357.9PLD_C103010831.60E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01115PLD1_2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Parathyroid hormone synthesis, secretion and actionmap04928
Glutamatergic synapsemap04724

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.249
SRR3591706second leaf2.735
SRR3591707mature leaf1.743
SRR3591708Shoot apex3.213
SRR3591709Stem1.639
SRR3591710White floral bud7.126
SRR3591711White flower1.992
SRR3591712Green floral bud10.161
SRR3591713Yellow flower1.362
SRP173429 SRR8316895Juvenile bud stage 1.821
SRR8316896Juvenile bud stage 2.975
SRR8316897Juvenile bud stage 1.567
SRR8316894Third green stage 1.481
SRR8316900Third green stage 7.822
SRR8316901Third green stage 6.257
SRR8316898Complete white stage 1.122
SRR8316899Complete white stage 3.443
SRR8316903Complete white stage 2.917
SRR8316902Silver flowering stage0.662
SRR8316904Silver flowering stage0.997
SRR8316905Silver flowering stage0.321
SRR8316906Gold flowering stage 2.165
SRR8316907Gold flowering stage 1.637
SRR8316908Gold flowering stage 4.873
SRP132670SRR6706286Control5.044
SRR6706287Light intensity 50%5.577
SRR6706288Light intensity 20%5.458
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.304
CNS0095593Slightly white alabastrum(diploid) 23.084
CNS0095594Slightly white alabastrum(diploid) 33.550
CNS0095595Whole white alabastrum(diploid) 25.858
CNS0095596Whole white alabastrum(diploid) 36.091
CNS0095597Whole white alabastrum(diploid) 45.907
CNS0095598Silvery flower (diploied) 12.135
CNS0095599Silvery flower (diploied) 21.836
CNS0095600Silvery flower (diploied) 32.629
CNS0095601Golden flower (diploid) 11.520
CNS0095602Golden flower (diploid) 22.240
CNS0095603Golden flower (diploid) 32.025
CNS0095604Slightly white alabastrum(tetraploid) 14.126
CNS0095605Slightly white alabastrum(tetraploid) 23.087
CNS0095606Slightly white alabastrum(tetraploid) 33.247
CNS0095607Whole white alabastrum(tetraploid) 16.229
CNS0095608Whole white alabastrum(tetraploid) 28.303
CNS0095609Whole white alabastrum(tetraploid) 38.482
CNS0095610Silvery flower (tetraploid) 11.590
CNS0095611Silvery flower (tetraploid) 21.648
CNS0095612Silvery flower (tetraploid) 31.065
CNS0095613Golden flower (tetraploid) 10.846
CNS0095614Golden flower (tetraploid) 21.643
CNS0095615Golden flower (tetraploid) 30.605
CRA001975CRR073297Stem 12.641
CRR073298Stem 23.197
CRR073299Stem 32.687
CRR073300Leaf 15.747
CRR073301Leaf 24.811
CRR073302Leaf 32.625
CRR073303Juvenile bud 14.417
CRR073304Juvenile bud 23.850
CRR073305Juvenile bud 32.197
CRR073306Third green 10.642
CRR073307Third green 20.489
CRR073308Third green 30.688
CRR073309Second white 10.204
CRR073310Second white 20.308
CRR073311Second white 30.337
CRR073312Silver flowering 11.609
CRR073313Silver flowering 20.832
CRR073314Silver flowering 30.865
CRR073315Gold flowering 11.687
CRR073316Gold flowering 23.948
CRR073317Gold flowering 32.417
CRR073318Tawny withering 13.886
CRR073319Tawny withering 24.824
CRR073320Tawny withering 32.388