Gene detail

Detail information of GWHGAAZE006145

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFC34137.1	0	3-hydroxy-3-methylglutaryl-CoA synthase [Camellia sinensis]
Swissprot	tr\|P54873\|HMCS_ARATH	4E-172	Hydroxymethylglutaryl-CoA synthase
trEMBL	tr\|H9CTV3\|H9CTV3_CAMSI	0	3-hydroxy-3-methylglutaryl-CoA synthase {ECO:0000313\|EMBL:AFC34137.1}
TAIR10	AT4G11820.1	4E-139	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	20020999	20023794	+
GWHAAZE00000002	mRNA	20020999	20023794	+
GWHAAZE00000002	exon	20020999	20021160	+
GWHAAZE00000002	exon	20021584	20021657	+
GWHAAZE00000002	exon	20021755	20021830	+
GWHAAZE00000002	exon	20021932	20021987	+
GWHAAZE00000002	exon	20022092	20022222	+
GWHAAZE00000002	exon	20022418	20022557	+
GWHAAZE00000002	exon	20022636	20022785	+
GWHAAZE00000002	exon	20023230	20023794	+
GWHAAZE00000002	CDS	20020999	20021160	+
GWHAAZE00000002	CDS	20021584	20021657	+
GWHAAZE00000002	CDS	20021755	20021830	+
GWHAAZE00000002	CDS	20021932	20021987	+
GWHAAZE00000002	CDS	20022092	20022222	+
GWHAAZE00000002	CDS	20022418	20022557	+
GWHAAZE00000002	CDS	20022636	20022785	+
GWHAAZE00000002	CDS	20023230	20023439	+
GWHAAZE00000002	three_prime_UTR	20023440	20023794	+

Transcript Sequence
>GWHTAAZE006153 ATGGGTCACGCTGAGGGACCAGCTCGACCAACTGGAGGAGCAGCTGCTATTGCAATGCTAATAGGGCCTGATGCTCCAATTGCATTTGAAAGCAAATTCAGGGCAAGCCATATGTCTCATGTCTATGATTTTTACAAGCCCAACCTTGGAAGTGAATATCCGGTTGTTGATGGGAAGCTTTCACAAACTTGTTATCTCATGGCACTTGATTCCTGTTACAAACGTTTCTGCGCCAAGTACGAGAAATTGGAAGGGAAAACGTTTTCAATGTCTGATGCAGAATATTTTGTATTTCATTCTCCATATAACAAGCTTGTACAGAAGAGCTTTGCTCGATTGATGTTCAATGACTTCTTGAGGAATGCCAGCTCTGTCAATGAGGCTTCTAAAGAAAAGCTTGCACCATTTTCAACTTTGACTGGCGATGAAAGCTACCAAAGTCGCGATCTTGAGAAGGTGCATCTCAAGTCCCTGGTTGCACTTATTTTTCGCCCCTGTTGCATCCCAGCAAGTTGCAAAGCCCTTTATGATGCAAAGGTGCAACCAACAACTTTGATACCAAAGCAAGTTGGAAACATGTACACTGCATCTCTTTATGCAGCGTTTGCTTCCCTTGTTCACAATAAGCATAGCACGCTGTCAGGCAATAGGGTAGTAATGTTCTCATACGGGAGTGGATTAACTGCCACGATGTTCTCGTTCTATCTTCGTGAAGGCAAACATCCTTTTAGCTTGTCAAACATTGCATCTGTGATGAATGTTGCGGAGAAGTTGAAGTCTAGGCATGAGTTCCCTCCCGAAAAATTTGTCGACGCCTTAAAGTTGATGGAGCACAGGTATGGGGCCAAGGACTTTGTAACGAGCAAGGACTGCAGCCTTCTAGCTCCGGGCACCTATTACCTGACCGAAGTCGATTCCATGTACCGTAGATTCTACTCCAAGAAGGGGGATAAGGCAGCTGACCAACGGTCACTGACAATGGACGAGGAGATGATTTAATGCAGTAGTAGCATTGGCCGAAGCGTGTTTTCCTTTTCGCAAGTGGTGTTGTCAGTACATAGAAGAATAACCATGCTTTCAGATGCTTTGTTTCGTAATTGCCGTGTAGTTTGCTTTTGCAAGAAGTTTTATCAGAGTTTATTCCTTAAGTAGACTCGTTCCCTCTTTCTTGTGAAAATGAAGGGTGTCGGTAGTATTTGATGAGAATGTTACGTAGAGTTTGTAATCTTCTAGTAATTAATAATCTTTTTTTTTTGGACAAAATTAATGATGTTATCAACTAGAGTGATGTCTTGACTCTTGATAAACAAAATGTAGCATAGAATGTCCATTTTGGGAAAAATGACAAAAAAGC

Network for GWHGAAZE006145

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08540.11	HMG_CoA_synt_C	27	315	4.00E-105

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01641	E2.3.3.10	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Butanoate metabolism	map00650
		Synthesis and degradation of ketone bodies	map00072
		Valine, leucine and isoleucine degradation	map00280
		Terpenoid backbone biosynthesis	map00900
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0004421	molecular_function	hydroxymethylglutaryl-CoA synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.175
	SRR3591706	second leaf	11.078
	SRR3591707	mature leaf	1.178
	SRR3591708	Shoot apex	14.711
	SRR3591709	Stem	0.408
	SRR3591710	White floral bud	8.190
	SRR3591711	White flower	4.149
	SRR3591712	Green floral bud	8.130
	SRR3591713	Yellow flower	0.446
SRP173429	SRR8316895	Juvenile bud stage	4.958
	SRR8316896	Juvenile bud stage	11.685
	SRR8316897	Juvenile bud stage	6.850
	SRR8316894	Third green stage	2.902
	SRR8316900	Third green stage	10.446
	SRR8316901	Third green stage	13.489
	SRR8316898	Complete white stage	0.663
	SRR8316899	Complete white stage	4.116
	SRR8316903	Complete white stage	0.882
	SRR8316902	Silver flowering stage	0.439
	SRR8316904	Silver flowering stage	0.180
	SRR8316905	Silver flowering stage	0.063
	SRR8316906	Gold flowering stage	1.070
	SRR8316907	Gold flowering stage	0.412
	SRR8316908	Gold flowering stage	0.376
SRP132670	SRR6706286	Control	3.632
	SRR6706287	Light intensity 50%	5.183
	SRR6706288	Light intensity 20%	5.673
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.747
	CNS0095593	Slightly white alabastrum(diploid) 2	12.983
	CNS0095594	Slightly white alabastrum(diploid) 3	15.045
	CNS0095595	Whole white alabastrum(diploid) 2	9.597
	CNS0095596	Whole white alabastrum(diploid) 3	12.386
	CNS0095597	Whole white alabastrum(diploid) 4	8.636
	CNS0095598	Silvery flower (diploied) 1	4.057
	CNS0095599	Silvery flower (diploied) 2	7.514
	CNS0095600	Silvery flower (diploied) 3	0.992
	CNS0095601	Golden flower (diploid) 1	3.361
	CNS0095602	Golden flower (diploid) 2	1.842
	CNS0095603	Golden flower (diploid) 3	2.913
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.788
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.358
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.764
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.827
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.133
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.271
	CNS0095610	Silvery flower (tetraploid) 1	0.983
	CNS0095611	Silvery flower (tetraploid) 2	1.744
	CNS0095612	Silvery flower (tetraploid) 3	1.698
	CNS0095613	Golden flower (tetraploid) 1	0.305
	CNS0095614	Golden flower (tetraploid) 2	0.609
	CNS0095615	Golden flower (tetraploid) 3	0.073
CRA001975	CRR073297	Stem 1	12.803
	CRR073298	Stem 2	11.614
	CRR073299	Stem 3	18.462
	CRR073300	Leaf 1	12.572
	CRR073301	Leaf 2	11.509
	CRR073302	Leaf 3	13.513
	CRR073303	Juvenile bud 1	9.878
	CRR073304	Juvenile bud 2	8.339
	CRR073305	Juvenile bud 3	3.993
	CRR073306	Third green 1	0.700
	CRR073307	Third green 2	0.768
	CRR073308	Third green 3	0.880
	CRR073309	Second white 1	0.402
	CRR073310	Second white 2	0.427
	CRR073311	Second white 3	0.020
	CRR073312	Silver flowering 1	0.244
	CRR073313	Silver flowering 2	0.170
	CRR073314	Silver flowering 3	0.278
	CRR073315	Gold flowering 1	1.391
	CRR073316	Gold flowering 2	0.960
	CRR073317	Gold flowering 3	1.604
	CRR073318	Tawny withering 1	3.684
	CRR073319	Tawny withering 2	1.597
	CRR073320	Tawny withering 3	1.282