Detail information of GWHGAAZE006137


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011072042.10PREDICTED: phospholipase D beta 1-like [Sesamum indicum]
Swissprottr|P93733|PLDB1_ARATH0Phospholipase D beta 1
trEMBLtr|F6HUI8|F6HUI8_VITVI0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}
TAIR10AT2G42010.10phospholipase D beta 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1985993919868499-
GWHAAZE00000002mRNA1985993919868499-
GWHAAZE00000002exon1985993919860232-
GWHAAZE00000002exon1986139619861593-
GWHAAZE00000002exon1986168119861857-
GWHAAZE00000002exon1986201719862165-
GWHAAZE00000002exon1986285919863006-
GWHAAZE00000002exon1986307719863145-
GWHAAZE00000002exon1986438919864637-
GWHAAZE00000002exon1986537319865472-
GWHAAZE00000002exon1986712619867241-
GWHAAZE00000002exon1986753419868499-
GWHAAZE00000002CDS1986753419868499-
GWHAAZE00000002CDS1986712619867241-
GWHAAZE00000002CDS1986537319865472-
GWHAAZE00000002CDS1986438919864637-
GWHAAZE00000002CDS1986307719863145-
GWHAAZE00000002CDS1986285919863006-
GWHAAZE00000002CDS1986201719862165-
GWHAAZE00000002CDS1986168119861857-
GWHAAZE00000002CDS1986139619861593-
GWHAAZE00000002CDS1985993919860232-
Transcript Sequence

Network for GWHGAAZE006137

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00168.31C2391669.50E-25
PF13091.7PLDc_25207035.10E-08
PF12357.9PLD_C7418113.20E-30
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01115PLD1_2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Parathyroid hormone synthesis, secretion and actionmap04928
Glutamatergic synapsemap04724

Gene Ontology

GO term OntologyName
GO:0046470biological_processphosphatidylcholine metabolic process
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0004630molecular_functionphospholipase D activity
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.994
SRR3591706second leaf4.243
SRR3591707mature leaf2.701
SRR3591708Shoot apex4.890
SRR3591709Stem3.024
SRR3591710White floral bud13.303
SRR3591711White flower3.536
SRR3591712Green floral bud18.961
SRR3591713Yellow flower1.903
SRP173429 SRR8316895Juvenile bud stage 3.142
SRR8316896Juvenile bud stage 5.419
SRR8316897Juvenile bud stage 2.196
SRR8316894Third green stage 2.606
SRR8316900Third green stage 15.125
SRR8316901Third green stage 13.026
SRR8316898Complete white stage 2.493
SRR8316899Complete white stage 5.614
SRR8316903Complete white stage 3.977
SRR8316902Silver flowering stage1.300
SRR8316904Silver flowering stage1.533
SRR8316905Silver flowering stage0.414
SRR8316906Gold flowering stage 3.222
SRR8316907Gold flowering stage 1.676
SRR8316908Gold flowering stage 5.965
SRP132670SRR6706286Control7.915
SRR6706287Light intensity 50%8.824
SRR6706288Light intensity 20%7.415
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.241
CNS0095593Slightly white alabastrum(diploid) 26.778
CNS0095594Slightly white alabastrum(diploid) 38.380
CNS0095595Whole white alabastrum(diploid) 215.661
CNS0095596Whole white alabastrum(diploid) 317.894
CNS0095597Whole white alabastrum(diploid) 418.282
CNS0095598Silvery flower (diploied) 13.085
CNS0095599Silvery flower (diploied) 23.033
CNS0095600Silvery flower (diploied) 33.457
CNS0095601Golden flower (diploid) 12.373
CNS0095602Golden flower (diploid) 23.191
CNS0095603Golden flower (diploid) 33.135
CNS0095604Slightly white alabastrum(tetraploid) 110.012
CNS0095605Slightly white alabastrum(tetraploid) 28.331
CNS0095606Slightly white alabastrum(tetraploid) 35.226
CNS0095607Whole white alabastrum(tetraploid) 120.634
CNS0095608Whole white alabastrum(tetraploid) 227.442
CNS0095609Whole white alabastrum(tetraploid) 318.198
CNS0095610Silvery flower (tetraploid) 12.416
CNS0095611Silvery flower (tetraploid) 22.438
CNS0095612Silvery flower (tetraploid) 33.399
CNS0095613Golden flower (tetraploid) 11.427
CNS0095614Golden flower (tetraploid) 21.874
CNS0095615Golden flower (tetraploid) 30.998
CRA001975CRR073297Stem 15.376
CRR073298Stem 23.946
CRR073299Stem 32.343
CRR073300Leaf 110.598
CRR073301Leaf 27.351
CRR073302Leaf 34.068
CRR073303Juvenile bud 18.289
CRR073304Juvenile bud 27.332
CRR073305Juvenile bud 33.380
CRR073306Third green 11.030
CRR073307Third green 20.928
CRR073308Third green 31.107
CRR073309Second white 10.331
CRR073310Second white 20.524
CRR073311Second white 30.579
CRR073312Silver flowering 11.730
CRR073313Silver flowering 20.747
CRR073314Silver flowering 31.279
CRR073315Gold flowering 12.105
CRR073316Gold flowering 23.441
CRR073317Gold flowering 32.669
CRR073318Tawny withering 16.522
CRR073319Tawny withering 28.966
CRR073320Tawny withering 34.195