Gene detail

Detail information of GWHGAAZE006125

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007040113.1	3.1203E-174	Phosphoenolpyruvate carboxylase-related kinase 1, putative isoform 2 [Theobroma cacao]
Swissprot	tr\|Q06850\|CDPK1_ARATH	2E-93	Calcium-dependent protein kinase 1
trEMBL	tr\|A0A061GC40\|A0A061GC40_THECC	1E-174	Phosphoenolpyruvate carboxylase-related kinase 1, putative isoform 2 {ECO:0000313\|EMBL:EOY24614.1}
TAIR10	AT1G12580.1	2E-132	phosphoenolpyruvate carboxylase-related kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19702845	19705380	-
GWHAAZE00000002	mRNA	19702845	19705380	-
GWHAAZE00000002	exon	19704792	19705380	-
GWHAAZE00000002	exon	19704095	19704391	-
GWHAAZE00000002	exon	19702845	19703035	-
GWHAAZE00000002	CDS	19704792	19705380	-
GWHAAZE00000002	CDS	19704095	19704391	-
GWHAAZE00000002	CDS	19702845	19703035	-

Transcript Sequence
>GWHTAAZE006133 ATGGACTTGGCTGAGAGTGATAACATTAAGGAGCCTCGTGTTCGATACTGCTATTGTTTCAAAGTTGCCAGCTTGACTGAATCAATTTTGGGCTCAACCGAGATTTCTAATTTTAAGGACCGCTATGTTCTGGGAGAGCAATTGGGATGGGGCCAATTCGGCATAATTAGGGCATGCTCGGATAAGTTGAGTGGTGAAGTTTTAGCTTGTAAATCTATCGGTAAAGAAAAATTAGTTACACCAGATGATGTGCGAAGCTTAAAGCTTGAGATTGAAATAATGACTAAATTATCGGGGCACCCAAATGTTGTGGAGCTCAAGGCGGTTTATGAAGATGACAAATTTGTGCATCTAGTGATGGAGCTTTGTGCTGGAGGGGAGCTTTTTCATCGGCTCGAAAAACATGGGAAGTTCTCCGAGTACGAGGCTCGGGGCCTTTTTAGGCACCTTATGGAAGTGGTTATATATTGTCATGATAAAGGTATTGTTCATAGGGATTTGAAGCCAGAAAATATCCTATTGGCCACAAAGTCGTCTTCTTCACCGATCAAATTAGCAGATTTTGGTCTTGCAACGTATATCAAACCTGGACAGAGTTTAAATGGTACAGTCGGGAGTCCATTTTATATTGCACCTGAGGTACTGGCTGGAGGTTATAACAAGGCTGCAGATGTGTGGAGCGCCGGTGTTATCCTCTACATTCTCCTCAGTGGGACGCCTCCATTTTGGGGAAAGACCAAATCAAAGATCTTTGGTGCTGTTAGGAATGCGGATTTAAGGTTTCCTCCCGATCCTTGGGACCGCTTGTCAGCATCGGCCAAGGATTTGGTCACTCGGATGCTCTGCGTAGATCCTAACAAAAGGCTCACCGCTACACAGGTTCTAGCCATGGGTAAAGATCTAGTAGCCGGGGGCAAGAGCAAGAAGACCAAGCGTACGTCACCTAGGTCTGATGATATTTACCTCAAGCTTTTCGTTAAGCTGTATCGATTTTTGGTAAGGAGGACTGGGAGCAACTTCAGTGCTGTGATACTGAAGCGTCTGTTCATGAGCAAGGTCAACAAGCCTGCTCTCTAG

Network for GWHGAAZE006125

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	42	296	2.70E-69
PF17135.5	Ribosomal_L18	301	358	5.00E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.925
	SRR3591706	second leaf	15.349
	SRR3591707	mature leaf	15.100
	SRR3591708	Shoot apex	33.612
	SRR3591709	Stem	25.897
	SRR3591710	White floral bud	22.393
	SRR3591711	White flower	27.897
	SRR3591712	Green floral bud	17.902
	SRR3591713	Yellow flower	24.772
SRP173429	SRR8316895	Juvenile bud stage	13.641
	SRR8316896	Juvenile bud stage	15.099
	SRR8316897	Juvenile bud stage	7.995
	SRR8316894	Third green stage	4.588
	SRR8316900	Third green stage	9.318
	SRR8316901	Third green stage	11.843
	SRR8316898	Complete white stage	7.723
	SRR8316899	Complete white stage	19.067
	SRR8316903	Complete white stage	11.961
	SRR8316902	Silver flowering stage	9.004
	SRR8316904	Silver flowering stage	12.157
	SRR8316905	Silver flowering stage	6.040
	SRR8316906	Gold flowering stage	23.095
	SRR8316907	Gold flowering stage	22.172
	SRR8316908	Gold flowering stage	23.958
SRP132670	SRR6706286	Control	10.771
	SRR6706287	Light intensity 50%	11.244
	SRR6706288	Light intensity 20%	10.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.857
	CNS0095593	Slightly white alabastrum(diploid) 2	9.322
	CNS0095594	Slightly white alabastrum(diploid) 3	8.052
	CNS0095595	Whole white alabastrum(diploid) 2	7.653
	CNS0095596	Whole white alabastrum(diploid) 3	5.970
	CNS0095597	Whole white alabastrum(diploid) 4	7.613
	CNS0095598	Silvery flower (diploied) 1	19.063
	CNS0095599	Silvery flower (diploied) 2	12.723
	CNS0095600	Silvery flower (diploied) 3	16.498
	CNS0095601	Golden flower (diploid) 1	16.764
	CNS0095602	Golden flower (diploid) 2	23.147
	CNS0095603	Golden flower (diploid) 3	23.265
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.585
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.005
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.233
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.570
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.523
	CNS0095610	Silvery flower (tetraploid) 1	16.316
	CNS0095611	Silvery flower (tetraploid) 2	16.248
	CNS0095612	Silvery flower (tetraploid) 3	28.435
	CNS0095613	Golden flower (tetraploid) 1	14.245
	CNS0095614	Golden flower (tetraploid) 2	16.475
	CNS0095615	Golden flower (tetraploid) 3	29.237
CRA001975	CRR073297	Stem 1	31.429
	CRR073298	Stem 2	28.992
	CRR073299	Stem 3	28.530
	CRR073300	Leaf 1	21.526
	CRR073301	Leaf 2	16.345
	CRR073302	Leaf 3	15.853
	CRR073303	Juvenile bud 1	12.838
	CRR073304	Juvenile bud 2	12.754
	CRR073305	Juvenile bud 3	15.850
	CRR073306	Third green 1	23.758
	CRR073307	Third green 2	15.438
	CRR073308	Third green 3	23.035
	CRR073309	Second white 1	18.223
	CRR073310	Second white 2	30.067
	CRR073311	Second white 3	30.920
	CRR073312	Silver flowering 1	27.940
	CRR073313	Silver flowering 2	21.714
	CRR073314	Silver flowering 3	23.276
	CRR073315	Gold flowering 1	15.806
	CRR073316	Gold flowering 2	21.516
	CRR073317	Gold flowering 3	22.477
	CRR073318	Tawny withering 1	32.686
	CRR073319	Tawny withering 2	19.089
	CRR073320	Tawny withering 3	32.386