Detail information of GWHGAAZE006124


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDY25018.18.03376E-63BnaC02g39900D [Brassica napus]
Swissprottr|P42791|RL182_ARATH2E-6260S ribosomal protein L18-2
trEMBLtr|A0A078GKB6|A0A078GKB6_BRANA3E-63BnaC02g39900D protein {ECO:0000313|EMBL:CDY25018.1}
TAIR10AT3G05590.19E-52ribosomal protein L18

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1970054119702823-
GWHAAZE00000002mRNA1970054119702823-
GWHAAZE00000002exon1970054119700782-
GWHAAZE00000002exon1970138919701790-
GWHAAZE00000002exon1970241519702823-
GWHAAZE00000002CDS1970241519702823-
GWHAAZE00000002CDS1970138919701790-
GWHAAZE00000002CDS1970054119700782-
Transcript Sequence

Network for GWHGAAZE006124

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17135.5Ribosomal_L1831165.50E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02883RP-L18e, RPL18 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.938
SRR3591706second leaf16.509
SRR3591707mature leaf12.880
SRR3591708Shoot apex37.354
SRR3591709Stem32.203
SRR3591710White floral bud21.881
SRR3591711White flower28.292
SRR3591712Green floral bud17.840
SRR3591713Yellow flower23.711
SRP173429 SRR8316895Juvenile bud stage 11.626
SRR8316896Juvenile bud stage 14.070
SRR8316897Juvenile bud stage 8.259
SRR8316894Third green stage 5.420
SRR8316900Third green stage 9.105
SRR8316901Third green stage 10.255
SRR8316898Complete white stage 4.956
SRR8316899Complete white stage 13.541
SRR8316903Complete white stage 9.824
SRR8316902Silver flowering stage7.306
SRR8316904Silver flowering stage10.380
SRR8316905Silver flowering stage5.219
SRR8316906Gold flowering stage 17.549
SRR8316907Gold flowering stage 15.182
SRR8316908Gold flowering stage 18.030
SRP132670SRR6706286Control9.103
SRR6706287Light intensity 50%9.707
SRR6706288Light intensity 20%9.881
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.739
CNS0095593Slightly white alabastrum(diploid) 214.707
CNS0095594Slightly white alabastrum(diploid) 317.622
CNS0095595Whole white alabastrum(diploid) 211.459
CNS0095596Whole white alabastrum(diploid) 37.092
CNS0095597Whole white alabastrum(diploid) 411.247
CNS0095598Silvery flower (diploied) 122.274
CNS0095599Silvery flower (diploied) 215.273
CNS0095600Silvery flower (diploied) 312.682
CNS0095601Golden flower (diploid) 118.165
CNS0095602Golden flower (diploid) 217.846
CNS0095603Golden flower (diploid) 316.608
CNS0095604Slightly white alabastrum(tetraploid) 113.885
CNS0095605Slightly white alabastrum(tetraploid) 212.560
CNS0095606Slightly white alabastrum(tetraploid) 317.618
CNS0095607Whole white alabastrum(tetraploid) 19.162
CNS0095608Whole white alabastrum(tetraploid) 25.747
CNS0095609Whole white alabastrum(tetraploid) 36.939
CNS0095610Silvery flower (tetraploid) 110.039
CNS0095611Silvery flower (tetraploid) 214.338
CNS0095612Silvery flower (tetraploid) 326.608
CNS0095613Golden flower (tetraploid) 115.589
CNS0095614Golden flower (tetraploid) 211.201
CNS0095615Golden flower (tetraploid) 322.051
CRA001975CRR073297Stem 125.685
CRR073298Stem 224.007
CRR073299Stem 322.282
CRR073300Leaf 116.755
CRR073301Leaf 215.649
CRR073302Leaf 312.945
CRR073303Juvenile bud 111.665
CRR073304Juvenile bud 28.681
CRR073305Juvenile bud 312.170
CRR073306Third green 115.985
CRR073307Third green 217.064
CRR073308Third green 315.271
CRR073309Second white 116.364
CRR073310Second white 221.428
CRR073311Second white 320.308
CRR073312Silver flowering 120.415
CRR073313Silver flowering 219.332
CRR073314Silver flowering 319.039
CRR073315Gold flowering 116.044
CRR073316Gold flowering 214.625
CRR073317Gold flowering 314.092
CRR073318Tawny withering 127.219
CRR073319Tawny withering 231.901
CRR073320Tawny withering 328.311