Gene detail

Detail information of GWHGAAZE006120

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP25514.1	1.03969E-86	hypothetical protein JCGZ_20670 [Jatropha curcas]
Swissprot	tr\|Q9M0L0\|DRE1A_ARATH	6E-70	Dehydration-responsive element-binding protein 1A
trEMBL	tr\|A0A067K136\|A0A067K136_JATCU	4E-87	Uncharacterized protein {ECO:0000313\|EMBL:KDP25514.1}
TAIR10	AT4G25480.1	3E-48	dehydration response element B1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19633303	19633977	+
GWHAAZE00000002	mRNA	19633303	19633977	+
GWHAAZE00000002	exon	19633303	19633977	+
GWHAAZE00000002	CDS	19633303	19633977	+

Transcript Sequence
>GWHTAAZE006128 ATGGATGCCTACAGTCCATGCTACGATCAGAATCCATTCGGGTCAAACTCCCAACAGCTCAACCCAATAGATACCTTGAGTCCTTCCTCACACTCTGACGAGGAACTTATATTGGCCTCGAGCCAGCCCAAAAAGCGGGCCGGGCGGAAAAAGTTCAATGAAACCCGACACCCCGTTTACAGGGGAGTGAGGAAGAAGAACTCGAACCGGTGGGTTTGTGAGCTCAGAGAGCCCAACAAGAAGACGCGTATATGGCTCGGGACGTACGCAACCGCTGAGATGGCGGCCCGGGCACACGACGTGGCAGCACTGGCATTGCGGGGCCCGCAAGCATGCCTCAACTTTGCCGATTCGGTGTGGCGCTTGCCCGTCCCAACTACCAAGGAGGCCAAGGATATCCAGAAGGCAGCTATGGAAGCGGCAGAGGCGTTCCGGCCAAGCGATGAGGTAGCGGACGAGGCTGCCACCACTTCCACCGGAGTTTCTGGAGGCAACGAGGCTGCAATGGAGCATCACACCTCCTATATGGACGAGGAAGCAGTGTATGATATGCCGGGATTGATTGCCAACATGGCGGAAGGGATGTTACTCTCTCCTCCTTGCTTAGCTGGTAGCTCCGATTGGGATTACGAGGAGAGTAACACTGACCTGTCACTGTGGAGTTATTCAATGTGA

Network for GWHGAAZE006120

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	58	108	1.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.989
	SRR3591706	second leaf	0.249
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.372
	SRR3591709	Stem	1.839
	SRR3591710	White floral bud	20.386
	SRR3591711	White flower	10.193
	SRR3591712	Green floral bud	4.972
	SRR3591713	Yellow flower	4.010
SRP173429	SRR8316895	Juvenile bud stage	110.112
	SRR8316896	Juvenile bud stage	50.055
	SRR8316897	Juvenile bud stage	89.397
	SRR8316894	Third green stage	2.058
	SRR8316900	Third green stage	1.724
	SRR8316901	Third green stage	19.953
	SRR8316898	Complete white stage	0.180
	SRR8316899	Complete white stage	57.505
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.176
	SRR8316904	Silver flowering stage	0.067
	SRR8316905	Silver flowering stage	0.127
	SRR8316906	Gold flowering stage	0.705
	SRR8316907	Gold flowering stage	0.996
	SRR8316908	Gold flowering stage	0.242
SRP132670	SRR6706286	Control	0.012
	SRR6706287	Light intensity 50%	0.115
	SRR6706288	Light intensity 20%	0.113
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.314
	CNS0095593	Slightly white alabastrum(diploid) 2	92.240
	CNS0095594	Slightly white alabastrum(diploid) 3	124.808
	CNS0095595	Whole white alabastrum(diploid) 2	94.487
	CNS0095596	Whole white alabastrum(diploid) 3	2.008
	CNS0095597	Whole white alabastrum(diploid) 4	42.010
	CNS0095598	Silvery flower (diploied) 1	99.673
	CNS0095599	Silvery flower (diploied) 2	238.194
	CNS0095600	Silvery flower (diploied) 3	61.906
	CNS0095601	Golden flower (diploid) 1	102.523
	CNS0095602	Golden flower (diploid) 2	88.704
	CNS0095603	Golden flower (diploid) 3	92.142
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.078
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.137
	CNS0095610	Silvery flower (tetraploid) 1	0.080
	CNS0095611	Silvery flower (tetraploid) 2	0.048
	CNS0095612	Silvery flower (tetraploid) 3	2.150
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.063
CRA001975	CRR073297	Stem 1	14.045
	CRR073298	Stem 2	17.085
	CRR073299	Stem 3	13.946
	CRR073300	Leaf 1	19.444
	CRR073301	Leaf 2	31.169
	CRR073302	Leaf 3	15.417
	CRR073303	Juvenile bud 1	10.000
	CRR073304	Juvenile bud 2	81.477
	CRR073305	Juvenile bud 3	36.983
	CRR073306	Third green 1	6.017
	CRR073307	Third green 2	9.251
	CRR073308	Third green 3	5.461
	CRR073309	Second white 1	6.083
	CRR073310	Second white 2	8.753
	CRR073311	Second white 3	8.351
	CRR073312	Silver flowering 1	34.862
	CRR073313	Silver flowering 2	17.732
	CRR073314	Silver flowering 3	8.873
	CRR073315	Gold flowering 1	7.257
	CRR073316	Gold flowering 2	36.536
	CRR073317	Gold flowering 3	32.934
	CRR073318	Tawny withering 1	3.939
	CRR073319	Tawny withering 2	125.672
	CRR073320	Tawny withering 3	1.750