Detail information of GWHGAAZE006104


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011033786.10PREDICTED: replication factor C subunit 2 [Populus euphratica]
Swissprottr|Q9CAM7|RFC2_ARATH0Replication factor C subunit 2
trEMBLtr|A0A067JNM6|A0A067JNM6_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP25487.1}
TAIR10AT1G63160.10replication factor C 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1939815619403013-
GWHAAZE00000002mRNA1939815619403013-
GWHAAZE00000002exon1940285219403013-
GWHAAZE00000002exon1940210319402209-
GWHAAZE00000002exon1940191319402014-
GWHAAZE00000002exon1940156119401756-
GWHAAZE00000002exon1939943819399566-
GWHAAZE00000002exon1939915219399346-
GWHAAZE00000002exon1939815619398655-
GWHAAZE00000002CDS1940285219403013-
GWHAAZE00000002CDS1940210319402209-
GWHAAZE00000002CDS1940191319402014-
GWHAAZE00000002CDS1940156119401756-
GWHAAZE00000002CDS1939943819399566-
GWHAAZE00000002CDS1939915219399346-
GWHAAZE00000002CDS1939854519398655-
GWHAAZE00000002three_prime_UTR1939815619398544-
Transcript Sequence

Network for GWHGAAZE006104

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.30AAA511672.70E-14
PF08542.12Rep_fac_C2373227.40E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10755RFC2_4 DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430

Gene Ontology

GO term OntologyName
GO:0006260biological_processDNA replication
GO:0005524molecular_functionATP binding
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.108
SRR3591706second leaf5.805
SRR3591707mature leaf5.051
SRR3591708Shoot apex27.555
SRR3591709Stem14.195
SRR3591710White floral bud9.687
SRR3591711White flower13.333
SRR3591712Green floral bud11.986
SRR3591713Yellow flower8.631
SRP173429 SRR8316895Juvenile bud stage 29.874
SRR8316896Juvenile bud stage 38.245
SRR8316897Juvenile bud stage 16.933
SRR8316894Third green stage 14.407
SRR8316900Third green stage 43.030
SRR8316901Third green stage 39.798
SRR8316898Complete white stage 15.995
SRR8316899Complete white stage 48.394
SRR8316903Complete white stage 20.618
SRR8316902Silver flowering stage15.010
SRR8316904Silver flowering stage15.894
SRR8316905Silver flowering stage8.758
SRR8316906Gold flowering stage 26.297
SRR8316907Gold flowering stage 32.531
SRR8316908Gold flowering stage 30.660
SRP132670SRR6706286Control40.842
SRR6706287Light intensity 50%40.940
SRR6706288Light intensity 20%42.369
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.728
CNS0095593Slightly white alabastrum(diploid) 246.891
CNS0095594Slightly white alabastrum(diploid) 350.230
CNS0095595Whole white alabastrum(diploid) 238.607
CNS0095596Whole white alabastrum(diploid) 338.754
CNS0095597Whole white alabastrum(diploid) 430.748
CNS0095598Silvery flower (diploied) 134.011
CNS0095599Silvery flower (diploied) 233.790
CNS0095600Silvery flower (diploied) 333.521
CNS0095601Golden flower (diploid) 131.905
CNS0095602Golden flower (diploid) 230.971
CNS0095603Golden flower (diploid) 332.201
CNS0095604Slightly white alabastrum(tetraploid) 145.915
CNS0095605Slightly white alabastrum(tetraploid) 243.100
CNS0095606Slightly white alabastrum(tetraploid) 350.561
CNS0095607Whole white alabastrum(tetraploid) 130.110
CNS0095608Whole white alabastrum(tetraploid) 222.245
CNS0095609Whole white alabastrum(tetraploid) 336.358
CNS0095610Silvery flower (tetraploid) 137.474
CNS0095611Silvery flower (tetraploid) 237.927
CNS0095612Silvery flower (tetraploid) 338.418
CNS0095613Golden flower (tetraploid) 128.509
CNS0095614Golden flower (tetraploid) 229.006
CNS0095615Golden flower (tetraploid) 328.349
CRA001975CRR073297Stem 152.719
CRR073298Stem 249.151
CRR073299Stem 366.378
CRR073300Leaf 144.443
CRR073301Leaf 253.020
CRR073302Leaf 343.715
CRR073303Juvenile bud 148.130
CRR073304Juvenile bud 237.981
CRR073305Juvenile bud 354.106
CRR073306Third green 124.248
CRR073307Third green 221.087
CRR073308Third green 320.546
CRR073309Second white 130.056
CRR073310Second white 223.541
CRR073311Second white 325.583
CRR073312Silver flowering 119.672
CRR073313Silver flowering 222.237
CRR073314Silver flowering 317.128
CRR073315Gold flowering 133.126
CRR073316Gold flowering 234.905
CRR073317Gold flowering 329.414
CRR073318Tawny withering 150.154
CRR073319Tawny withering 233.271
CRR073320Tawny withering 342.242