Detail information of GWHGAAZE006103


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002318822.13.99946E-90hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
Swissprottr|Q9FUL4|RL24_PRUAV5E-7960S ribosomal protein L24
trEMBLtr|A9P8N0|A9P8N0_POPTR1E-90Uncharacterized protein {ECO:0000313|EMBL:EEE97042.1}
TAIR10AT2G36620.12E-50ribosomal protein L24

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1937901419381961-
GWHAAZE00000002mRNA1937901419381961-
GWHAAZE00000002exon1937901419379167-
GWHAAZE00000002exon1938020219380350-
GWHAAZE00000002exon1938044919380550-
GWHAAZE00000002exon1938097819381053-
GWHAAZE00000002exon1938144319381494-
GWHAAZE00000002exon1938182319381961-
GWHAAZE00000002CDS1938182319381961-
GWHAAZE00000002CDS1938144319381494-
GWHAAZE00000002CDS1938097819381053-
GWHAAZE00000002CDS1938044919380550-
GWHAAZE00000002CDS1938020219380350-
GWHAAZE00000002CDS1937901419379167-
Transcript Sequence

Network for GWHGAAZE006103

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01246.21Ribosomal_L24e651268.60E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02896RP-L24e, RPL24 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf50.436
SRR3591706second leaf8.983
SRR3591707mature leaf4.351
SRR3591708Shoot apex79.505
SRR3591709Stem15.655
SRR3591710White floral bud9.615
SRR3591711White flower8.479
SRR3591712Green floral bud35.563
SRR3591713Yellow flower2.215
SRP173429 SRR8316895Juvenile bud stage 39.686
SRR8316896Juvenile bud stage 66.501
SRR8316897Juvenile bud stage 27.953
SRR8316894Third green stage 23.074
SRR8316900Third green stage 59.458
SRR8316901Third green stage 57.370
SRR8316898Complete white stage 1.937
SRR8316899Complete white stage 26.752
SRR8316903Complete white stage 2.691
SRR8316902Silver flowering stage2.399
SRR8316904Silver flowering stage1.591
SRR8316905Silver flowering stage0.561
SRR8316906Gold flowering stage 3.684
SRR8316907Gold flowering stage 2.184
SRR8316908Gold flowering stage 3.274
SRP132670SRR6706286Control78.311
SRR6706287Light intensity 50%76.607
SRR6706288Light intensity 20%80.218
CNP0000432CNS0095592Slightly white alabastrum(diploid) 179.023
CNS0095593Slightly white alabastrum(diploid) 280.329
CNS0095594Slightly white alabastrum(diploid) 386.298
CNS0095595Whole white alabastrum(diploid) 262.561
CNS0095596Whole white alabastrum(diploid) 383.881
CNS0095597Whole white alabastrum(diploid) 452.716
CNS0095598Silvery flower (diploied) 119.115
CNS0095599Silvery flower (diploied) 216.335
CNS0095600Silvery flower (diploied) 36.281
CNS0095601Golden flower (diploid) 114.935
CNS0095602Golden flower (diploid) 26.412
CNS0095603Golden flower (diploid) 34.690
CNS0095604Slightly white alabastrum(tetraploid) 154.772
CNS0095605Slightly white alabastrum(tetraploid) 263.914
CNS0095606Slightly white alabastrum(tetraploid) 352.365
CNS0095607Whole white alabastrum(tetraploid) 135.326
CNS0095608Whole white alabastrum(tetraploid) 232.375
CNS0095609Whole white alabastrum(tetraploid) 343.910
CNS0095610Silvery flower (tetraploid) 15.337
CNS0095611Silvery flower (tetraploid) 25.998
CNS0095612Silvery flower (tetraploid) 33.271
CNS0095613Golden flower (tetraploid) 10.983
CNS0095614Golden flower (tetraploid) 22.899
CNS0095615Golden flower (tetraploid) 31.136
CRA001975CRR073297Stem 178.261
CRR073298Stem 276.561
CRR073299Stem 371.535
CRR073300Leaf 161.904
CRR073301Leaf 272.500
CRR073302Leaf 373.164
CRR073303Juvenile bud 145.200
CRR073304Juvenile bud 230.673
CRR073305Juvenile bud 330.248
CRR073306Third green 11.505
CRR073307Third green 22.073
CRR073308Third green 32.655
CRR073309Second white 10.404
CRR073310Second white 20.886
CRR073311Second white 30.273
CRR073312Silver flowering 11.332
CRR073313Silver flowering 20.255
CRR073314Silver flowering 32.387
CRR073315Gold flowering 124.311
CRR073316Gold flowering 228.963
CRR073317Gold flowering 314.185
CRR073318Tawny withering 134.724
CRR073319Tawny withering 232.765
CRR073320Tawny withering 338.097