Detail information of GWHGAAZE006097


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007040131.10GRAS family transcription factor [Theobroma cacao]
Swissprottr|Q9CAN3|SCL28_ARATH0Scarecrow-like protein 28
trEMBLtr|A0A061G628|A0A061G628_THECC0GRAS family transcription factor {ECO:0000313|EMBL:EOY24632.1}
TAIR10AT1G63100.12E-152GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1929388019295394-
GWHAAZE00000002mRNA1929388019295394-
GWHAAZE00000002exon1929388019295394-
GWHAAZE00000002CDS1929388019295394-
Transcript Sequence

Network for GWHGAAZE006097

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS1184884.70E-127
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.831
SRR3591706second leaf7.034
SRR3591707mature leaf0.442
SRR3591708Shoot apex52.285
SRR3591709Stem9.987
SRR3591710White floral bud0.511
SRR3591711White flower0.334
SRR3591712Green floral bud1.152
SRR3591713Yellow flower0.066
SRP173429 SRR8316895Juvenile bud stage 7.710
SRR8316896Juvenile bud stage 6.007
SRR8316897Juvenile bud stage 3.754
SRR8316894Third green stage 2.574
SRR8316900Third green stage 0.821
SRR8316901Third green stage 1.033
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.636
SRR8316903Complete white stage 0.033
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.093
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.418
SRR6706287Light intensity 50%1.216
SRR6706288Light intensity 20%1.414
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.981
CNS0095593Slightly white alabastrum(diploid) 22.421
CNS0095594Slightly white alabastrum(diploid) 32.578
CNS0095595Whole white alabastrum(diploid) 21.361
CNS0095596Whole white alabastrum(diploid) 30.292
CNS0095597Whole white alabastrum(diploid) 41.773
CNS0095598Silvery flower (diploied) 16.363
CNS0095599Silvery flower (diploied) 25.202
CNS0095600Silvery flower (diploied) 30.929
CNS0095601Golden flower (diploid) 11.220
CNS0095602Golden flower (diploid) 21.488
CNS0095603Golden flower (diploid) 31.170
CNS0095604Slightly white alabastrum(tetraploid) 14.955
CNS0095605Slightly white alabastrum(tetraploid) 23.454
CNS0095606Slightly white alabastrum(tetraploid) 39.582
CNS0095607Whole white alabastrum(tetraploid) 13.949
CNS0095608Whole white alabastrum(tetraploid) 20.371
CNS0095609Whole white alabastrum(tetraploid) 30.530
CNS0095610Silvery flower (tetraploid) 10.072
CNS0095611Silvery flower (tetraploid) 20.521
CNS0095612Silvery flower (tetraploid) 30.074
CNS0095613Golden flower (tetraploid) 10.042
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.076
CRA001975CRR073297Stem 16.233
CRR073298Stem 25.933
CRR073299Stem 37.488
CRR073300Leaf 12.292
CRR073301Leaf 20.937
CRR073302Leaf 30.728
CRR073303Juvenile bud 10.484
CRR073304Juvenile bud 20.032
CRR073305Juvenile bud 30.372
CRR073306Third green 10.143
CRR073307Third green 20.000
CRR073308Third green 30.065
CRR073309Second white 10.000
CRR073310Second white 20.054
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.033
CRR073315Gold flowering 10.331
CRR073316Gold flowering 20.378
CRR073317Gold flowering 30.364
CRR073318Tawny withering 110.451
CRR073319Tawny withering 27.217
CRR073320Tawny withering 311.018