Detail information of GWHGAAZE006091


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09740.10unnamed protein product [Coffea canephora]
Swissprottr|Q1W2L8|GSH1_TOBAC0Glutamate--cysteine ligase, chloroplastic (Precursor)
trEMBLtr|A0A068UMK1|A0A068UMK1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313|EMBL:CDP09740.1}
TAIR10AT4G23100.30glutamate-cysteine ligase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1918127719190132-
GWHAAZE00000002mRNA1918127719190132-
GWHAAZE00000002exon1918980419190132-
GWHAAZE00000002exon1918884819188998-
GWHAAZE00000002exon1918853519188642-
GWHAAZE00000002exon1918714819187240-
GWHAAZE00000002exon1918625919186342-
GWHAAZE00000002exon1918604419186112-
GWHAAZE00000002exon1918589119185961-
GWHAAZE00000002exon1918573019185798-
GWHAAZE00000002exon1918485519184948-
GWHAAZE00000002exon1918467219184761-
GWHAAZE00000002exon1918440619184486-
GWHAAZE00000002exon1918202919182121-
GWHAAZE00000002exon1918186319181943-
GWHAAZE00000002exon1918169419181763-
GWHAAZE00000002exon1918127719181365-
GWHAAZE00000002CDS1918980419190132-
GWHAAZE00000002CDS1918884819188998-
GWHAAZE00000002CDS1918853519188642-
GWHAAZE00000002CDS1918714819187240-
GWHAAZE00000002CDS1918625919186342-
GWHAAZE00000002CDS1918604419186112-
GWHAAZE00000002CDS1918589119185961-
GWHAAZE00000002CDS1918573019185798-
GWHAAZE00000002CDS1918485519184948-
GWHAAZE00000002CDS1918467219184761-
GWHAAZE00000002CDS1918440619184486-
GWHAAZE00000002CDS1918202919182121-
GWHAAZE00000002CDS1918186319181943-
GWHAAZE00000002CDS1918169419181763-
GWHAAZE00000002CDS1918127719181365-
Transcript Sequence

Network for GWHGAAZE006091

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04107.14GCS21344332.00E-96
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01919gshA Metabolic pathways map01100
Cysteine and methionine metabolismmap00270
Glutathione metabolismmap00480

Gene Ontology

GO term OntologyName
GO:0006750biological_processglutathione biosynthetic process
GO:0042398biological_processcellular modified amino acid biosynthetic process
GO:0004357molecular_functionglutamate-cysteine ligase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.405
SRR3591706second leaf37.860
SRR3591707mature leaf33.143
SRR3591708Shoot apex45.171
SRR3591709Stem47.584
SRR3591710White floral bud42.135
SRR3591711White flower42.346
SRR3591712Green floral bud56.302
SRR3591713Yellow flower47.169
SRP173429 SRR8316895Juvenile bud stage 37.368
SRR8316896Juvenile bud stage 52.394
SRR8316897Juvenile bud stage 30.410
SRR8316894Third green stage 24.854
SRR8316900Third green stage 84.999
SRR8316901Third green stage 75.708
SRR8316898Complete white stage 26.750
SRR8316899Complete white stage 95.815
SRR8316903Complete white stage 43.113
SRR8316902Silver flowering stage20.323
SRR8316904Silver flowering stage22.943
SRR8316905Silver flowering stage11.975
SRR8316906Gold flowering stage 48.032
SRR8316907Gold flowering stage 50.364
SRR8316908Gold flowering stage 56.344
SRP132670SRR6706286Control62.621
SRR6706287Light intensity 50%69.504
SRR6706288Light intensity 20%76.704
CNP0000432CNS0095592Slightly white alabastrum(diploid) 142.429
CNS0095593Slightly white alabastrum(diploid) 246.752
CNS0095594Slightly white alabastrum(diploid) 343.175
CNS0095595Whole white alabastrum(diploid) 239.977
CNS0095596Whole white alabastrum(diploid) 340.727
CNS0095597Whole white alabastrum(diploid) 433.778
CNS0095598Silvery flower (diploied) 148.893
CNS0095599Silvery flower (diploied) 243.038
CNS0095600Silvery flower (diploied) 358.842
CNS0095601Golden flower (diploid) 136.493
CNS0095602Golden flower (diploid) 256.858
CNS0095603Golden flower (diploid) 355.250
CNS0095604Slightly white alabastrum(tetraploid) 157.760
CNS0095605Slightly white alabastrum(tetraploid) 247.194
CNS0095606Slightly white alabastrum(tetraploid) 3111.146
CNS0095607Whole white alabastrum(tetraploid) 136.808
CNS0095608Whole white alabastrum(tetraploid) 229.089
CNS0095609Whole white alabastrum(tetraploid) 390.332
CNS0095610Silvery flower (tetraploid) 173.247
CNS0095611Silvery flower (tetraploid) 265.766
CNS0095612Silvery flower (tetraploid) 363.696
CNS0095613Golden flower (tetraploid) 153.152
CNS0095614Golden flower (tetraploid) 266.981
CNS0095615Golden flower (tetraploid) 347.937
CRA001975CRR073297Stem 175.065
CRR073298Stem 276.355
CRR073299Stem 380.673
CRR073300Leaf 192.860
CRR073301Leaf 274.338
CRR073302Leaf 3104.763
CRR073303Juvenile bud 192.841
CRR073304Juvenile bud 276.829
CRR073305Juvenile bud 390.638
CRR073306Third green 126.044
CRR073307Third green 219.419
CRR073308Third green 325.084
CRR073309Second white 137.775
CRR073310Second white 244.127
CRR073311Second white 338.332
CRR073312Silver flowering 133.532
CRR073313Silver flowering 234.654
CRR073314Silver flowering 332.516
CRR073315Gold flowering 142.358
CRR073316Gold flowering 262.063
CRR073317Gold flowering 341.930
CRR073318Tawny withering 147.317
CRR073319Tawny withering 247.250
CRR073320Tawny withering 344.476