Gene detail

Detail information of GWHGAAZE006087

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010255402.1	0	PREDICTED: lysine-specific demethylase 5A isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q53WJ1\|JM703_ORYSJ	1E-40	Lysine-specific demethylase JMJ703
trEMBL	tr\|W9QH60\|W9QH60_9ROSA	0	Lysine-specific demethylase 5A {ECO:0000313\|EMBL:EXB37360.1}
TAIR10	AT1G63490.1	7E-47	transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19140830	19142209	-
GWHAAZE00000002	mRNA	19140830	19142209	-
GWHAAZE00000002	exon	19140830	19142209	-
GWHAAZE00000002	CDS	19140830	19142209	-

Transcript Sequence
>GWHTAAZE006095 ATGGGGAAAGGGAGACCTAGGGCTGTAGAGAAAGGGGTACCAGGGCAAAGTTCAACTGTGTTATCATCTGGTTCAGTGAATATACCATCAGGGCCCGTTTATTATCCAACTGAAGAGGAATTTAAGGATCCTTTAGAGTTTATTTATAAGATCAGGCCAGAAGCTGAACCCTATGGGATTTGTAGAATTGTTCCACCTAAGAGTTGGAAACCCCCTTTTGCATTAGATTTAGATTCATTCACTTTCCCCACTAAAACCCAGGCTATTCATCAGTTGCAAGTGAGGTCCGCTGCTTGTGATTCCAAGACCTTTGAGTTAGAGTACAACAGGTTTTTGGATAATTATTGTGGTAGGAAGGCGAAGAAGAAGGTGGTATTTGAAGGGGAGGAATTGGATTTGTGTAGATTATTTAATGCGGTGAAGCGGTATGGGGGTTACGATAAGGTTGTGGATGGAAAGAAGTGGGGGGAGGTTTTTCGGTTTGTGCGGTCTGCTGGGAAGATTTCGGAGTGTGCAAAGCATGTGTTATGTCAATTGTACCGAGAGCATTTGTATGATTATGAAAATTATTATGGTCAGCTGAATCAAGAGAAAAATAAGAACTGCAAAAAAGAATCATCTTGTGAGATAAAGGGGGAGCCACAGGTAGAATTTTCAAGTTCTAAGAGAAGACGGAAGAATCATTCGGGTGAGAGAGTTGAAGATTGTAAGGTAGAAGCGCAAGAGCTTGATCAGATTTGTGAACAATGCAGAAGTGGATTACATGGGGATGTAATGCTGTTGTGTGATAGGTGTAATAAGGGTTGGCATATATATTGCTTGTCACCACCCTTGAAACGGATTCCACTGGGGAACTGGTATTGCTTAGAGTGCTTGAATTCTGAGAAAGATAGCTTTGGGTTCGTCCCTGGTAAGCAGTTCTCATTAGAAGCTTTTAGACGAGTGGCTGACCGGGCAAAGAGGAGGTGGTTCGGGTCTGGGTCAACTGGGAGGGAGCAATTAGAGAAACGGTTCTGGGAAATAGTGGAGGGTTCAGCCGGTATGGTTGAAGTTATGTATGGAAGTGACTTGGATACTTCTGTCTACGGAAGTGGGTTTCCACGGTTAAATGACCAAAGACCAGAATCAGTAGGGATAGATGTATGGGATGAATATTGTGCTAGTCCATGGAATCTCAATAACTTGCCCAAGCTACAAGGTTCGATGCTTCGAGCTGTTCATCATAGCATTGCTGGTGTTATGGTACCTTGGCTCTATATTGGGATGCTCTTCTCATCATTCTGCTGGCATTTCGAAGACCACTGTTTCTATTCAATGAATTATCTCCACTGGTACGCTATCTGGCCACCCTTCTGTCTTAGGGCCTCCATTTCTTCATAA

Network for GWHGAAZE006087

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02375.18	JmjN	32	65	1.70E-15
PF01388.22	ARID	114	188	2.20E-10
PF00628.30	PHD	246	293	9.10E-10
PF02373.23	JmjC	417	445	2.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.183
	SRR3591706	second leaf	10.406
	SRR3591707	mature leaf	10.221
	SRR3591708	Shoot apex	6.856
	SRR3591709	Stem	10.409
	SRR3591710	White floral bud	17.836
	SRR3591711	White flower	17.516
	SRR3591712	Green floral bud	11.501
	SRR3591713	Yellow flower	12.890
SRP173429	SRR8316895	Juvenile bud stage	9.386
	SRR8316896	Juvenile bud stage	12.302
	SRR8316897	Juvenile bud stage	5.135
	SRR8316894	Third green stage	5.865
	SRR8316900	Third green stage	12.808
	SRR8316901	Third green stage	15.085
	SRR8316898	Complete white stage	3.144
	SRR8316899	Complete white stage	9.632
	SRR8316903	Complete white stage	10.960
	SRR8316902	Silver flowering stage	5.328
	SRR8316904	Silver flowering stage	14.314
	SRR8316905	Silver flowering stage	6.379
	SRR8316906	Gold flowering stage	18.103
	SRR8316907	Gold flowering stage	18.940
	SRR8316908	Gold flowering stage	18.235
SRP132670	SRR6706286	Control	15.947
	SRR6706287	Light intensity 50%	17.488
	SRR6706288	Light intensity 20%	17.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.069
	CNS0095593	Slightly white alabastrum(diploid) 2	3.092
	CNS0095594	Slightly white alabastrum(diploid) 3	2.366
	CNS0095595	Whole white alabastrum(diploid) 2	4.443
	CNS0095596	Whole white alabastrum(diploid) 3	2.328
	CNS0095597	Whole white alabastrum(diploid) 4	4.898
	CNS0095598	Silvery flower (diploied) 1	6.224
	CNS0095599	Silvery flower (diploied) 2	5.515
	CNS0095600	Silvery flower (diploied) 3	14.818
	CNS0095601	Golden flower (diploid) 1	3.463
	CNS0095602	Golden flower (diploid) 2	15.202
	CNS0095603	Golden flower (diploid) 3	15.614
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.394
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.263
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.229
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.910
	CNS0095610	Silvery flower (tetraploid) 1	21.308
	CNS0095611	Silvery flower (tetraploid) 2	16.018
	CNS0095612	Silvery flower (tetraploid) 3	16.790
	CNS0095613	Golden flower (tetraploid) 1	6.611
	CNS0095614	Golden flower (tetraploid) 2	16.364
	CNS0095615	Golden flower (tetraploid) 3	20.964
CRA001975	CRR073297	Stem 1	7.683
	CRR073298	Stem 2	8.065
	CRR073299	Stem 3	4.457
	CRR073300	Leaf 1	9.129
	CRR073301	Leaf 2	6.200
	CRR073302	Leaf 3	3.934
	CRR073303	Juvenile bud 1	1.800
	CRR073304	Juvenile bud 2	2.380
	CRR073305	Juvenile bud 3	4.574
	CRR073306	Third green 1	2.675
	CRR073307	Third green 2	1.503
	CRR073308	Third green 3	2.164
	CRR073309	Second white 1	1.737
	CRR073310	Second white 2	5.680
	CRR073311	Second white 3	7.154
	CRR073312	Silver flowering 1	4.840
	CRR073313	Silver flowering 2	3.296
	CRR073314	Silver flowering 3	3.528
	CRR073315	Gold flowering 1	0.555
	CRR073316	Gold flowering 2	2.323
	CRR073317	Gold flowering 3	1.203
	CRR073318	Tawny withering 1	2.640
	CRR073319	Tawny withering 2	1.058
	CRR073320	Tawny withering 3	1.725